AT5G53500.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transducin/WD40 repeat-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781), G-protein beta WD-40 repeat, region (InterPro:IPR020472); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G24320.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:21726167..21728524 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 72453.90 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.66 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.46 | ||||||||||||||||||||||||||||||||||||||||
| Length | 654 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDYLSQEEDL QFFDANEEMM ALNPSGFGFD VWNDSPGSVV ERRRKFLEWM GVEEEGRVET KDSVSGSSVE SCFDGGEENS VEAEERSGEC SSSSSEVSLS 101: GSSVEVSEEL SLRVDRNVGG CDVTRRQSSS MASCSSSRYC QVKETEKQRN IAGLVTSFKK GWLSRLRSMG CTADTNIESG GRMRASSGYG DVISRVKVKH 201: CKKQAKELSA LYQSQDIKAH DGAILAMKFS NDGKFLASSG EDGIVRVWKV VEDKKSRLRR DCLNEIDPSC MYFEVNDLSQ LKPVLVNEEK PKKTTESFRK 301: TSDSACVVFP PKVFRIMEKP LYEFRGHTGE VLDISWSKDN YLLSASMDKT VRLWKVGSND CLGVFAHNSY VTSVQFNPVN ENYFMSGSID GKVRIWNISG 401: CSVVDWADLK DIISAVCYRP DGQGGIIGSL NGSCRFFNMS GEFLELDSQI HLHNKKKSSN KRITGFQFLP QEPTKVLVVS ADSKVRILQG NNVVRKYKGV 501: CKTRSLTSAS LTSDGKHIVS ACEDSNVYIW SNDEESETKK IRSFERFSAN ASVAATWCGF SDHNTTLPFS SPSCLSHNEG FVPGSISKGS ATWPEENLPA 601: NPLSTSAMNA SHYKFLKSSY QRASSSLSWG MVIVTGGWDG QIRTFQNYGL PVTT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)