AT5G51380.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:mitochondrion 0.987 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : RNI-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
RNI-like superfamily protein; BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT5G51370.2); Has 3650 Blast hits to 2073 proteins in 189 species: Archae - 0; Bacteria - 108; Metazoa - 1506; Fungi - 242; Plants - 1431; Viruses - 0; Other Eukaryotes - 363 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:+:20875945..20877779 | ||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 53150.10 Da | ||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.93 | ||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.08 | ||||||||||||||||||||||||||||||||||||||||
Length | 479 amino acids | ||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MTFREKMPTS PKSPLRRRRS SWTGTWLNHQ TTSFKQAVSA VIQAQSPRSR FKSLSSDFSD VDRTLSLSDS LLLKILEKLP ESQNEDVSLV CKRWLSVQGR 101: RLRSMKVFDW EFLLSGRLVS RFPKLTSVDL VNACFNPSSN SGILLCHTSI SFHVSTDSSL NLNFVEESLL DNEMVDKGLR VLGRGSFDLI KLVVINATEL 201: GLLSLAEDCS DLQELELHKC SDNLLRGIAA CENLRGLRLV GSVDGLYSSS VSDIGLTILA QGCKRLVKLE LSGCEGSFDG IKAIGQCCEV LEELSICDHR 301: MDDGWIAALS YFESLKTLLI SSCRKIDSSP GPGKLLGSCP ALESLQLRRC CLNDKEGMRA LFKVCDGVTK VNIQDCWGLD DDSFSLAKAF RRVRFLSLEG 401: CSILTTSGLE SVILHWEELE SMRVVSCKNI KDSEISAALS SLFSLLKELT WRPDTRSHLS SSLEGTGIGK RGSKFFKKR |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)