AT5G57410.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 ASURE: cytoskeleton What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Afadin/alpha-actinin-binding protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Afadin/alpha-actinin-binding protein; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Afadin/alpha-actinin-binding (InterPro:IPR021622); BEST Arabidopsis thaliana protein match is: Afadin/alpha-actinin-binding protein (TAIR:AT2G18876.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:23265102..23267641 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 42661.60 Da | ||||||||||||||||||||||||
| IEP (calculated) | 5.97 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.83 | ||||||||||||||||||||||||
| Length | 373 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPANDAEYDL KVLSQSASAG DYTFANEDNL EHCTKYLNQT MVTFGFPASL DLFSNDPVSI SRTCNCMYSL LQQRQRDIEF RESANELRQR QQSDIARLEA 101: KVERLEALLQ QKDREIATIT RTEAKNTAAL KSQIEKLQQE RDEFQRMVIG NQQVKAQQIH EMKKKEKDYI KLQERLNQVL MEKKKESRSG MEIMNLLQKE 201: GRQRGTWNGK KTDTDFYKKI VDAYEAKNQE LMAENTSLRA LLRSMQTDMR DFLNAPNGSA TLAGSEKREA DPSQSPLGGK TDVFDLPYRM ARGQIEESLR 301: TKMASIKESM VQLQDAPKRA SVTSEATERE LELEAQLVEA RSIIQEQESI MSKHLPKSEQ RRESVASLAA EGV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)