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AT5G47350.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : alpha/beta-Hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: palmitoyl-(protein) hydrolase activity; INVOLVED IN: protein modification process; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Palmitoyl protein thioesterase (InterPro:IPR002472); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G47330.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G47350-MONOMEReggNOG:COG1075eggNOG:KOG2541EMBL:AB018117
EMBL:AY093073EMBL:AY128772EMBL:CP002688EnsemblPlants:AT5G47350
EnsemblPlants:AT5G47350.1entrez:834782ESTHER:arath-Q9LVS4Gene3D:3.40.50.1820
GeneID:834782GO:GO:0002084GO:GO:0008474Gramene:AT5G47350.1
gramene_pathway:3.1.2.2gramene_pathway:PWY-5148hmmpanther:PTHR11247hmmpanther:PTHR11247:SF8
InterPro:IPR002472InterPro:IPR029058InterPro:IPR030294KEGG:ath:AT5G47350
KO:K01074OMA:WLIPLTQPANTHER:PTHR11247:SF8Pfam:PF02089
PhylomeDB:Q9LVS4PRINTS:PR00414Proteomes:UP000006548Reactome:R-ATH-75876
RefSeq:NP_199546.1SMR:Q9LVS4STRING:3702.AT5G47350.1SUPFAM:SSF53474
TAIR:AT5G47350TMHMM:TMhelixUniGene:At.49137UniProt:Q9LVS4
Coordinates (TAIR10) chr5:+:19212754..19214318
Molecular Weight (calculated) 34697.60 Da
IEP (calculated) 4.77
GRAVY (calculated) -0.04
Length 316 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKGLTMSCV LVVVAFLAMV HVSVSVPFVV FPEIGTQCSD APNANFTQLL SNLSSSPGFC IEIGEGNPIG ASWLIPLTQQ AEVACDKVTQ MEELSQGYNI
101: VGRAQGSLVA RGLIEFCEGG PPVHNYISLA GPHAGTADLL RCNTSGLICD IANGIGKENP YSDFVQDNLA PSGYFKNPKN VTGYLKDCQY LPKLNNERPY
201: ERNTTYKDRF ASLQNLVFVL FENDTVIVPK ESSWFGFYPD GDLTHVLPVQ ETKLYIEDWI GLKALVVAGK VQFVNVTGDH LIMADEDLVK YVVPLLQDQQ
301: SAPPRLNRKT KEPLHP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)