AT5G46450.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.989 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G46470.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:18835618..18839546 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 128011.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.79 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1123 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MASSSSSSRN WSYDVFPSFS GEDVRKTFLS HFLRELERKS IITFKDNEME RSQSIAPELV EAIKDSRIAV IVFSKNYASS SWCLNELLEI MRCNKYLGQQ 0101: VIPVFYYLDP SHLRKQSGEF GEAFKKTCQN QTEEVKNQWK QALTDVSNIL GYHSKNCNSE ATMIEEISSH ILGKLSLTPS NDFEEFVGIK DHIEKVRLLL 0201: HLESDEVRMV GIWGTSGIGK TTIARALFSN LSSQFQSSVY IDRAFISKSM EGYGRANPDD YNMKLRLREN FLFEILGKKN MKIGAMEERL KHQKVLIIID 0301: DLDDQDVLDA LVGRTQWFGS GSRIIVVTKN KHFLRAHGID HVYEACLPSE ELALEMFCRY AFRKNSPPDG FMELSSEVAL RAGNLPLGLK VLGSYLRGRD 0401: IEDWMDMMPR LQNDLDGKIE KTLRVSYDGL NNKKDEAIFR HIACLFNGEK VNDIKLLLAE SDLDVNIGLK NLVDKSLIFV REDTIEMHRL LQDMGKEIVR 0501: AQSNEPGERE FLVDSKHIYD VLEDNTGTKK VLGIALDINE TDGLYIHESA FKGMRNLLFL NFYTKQKKDV TWHLSEGFDH LPPKLRLLSW EKYPLRCMPS 0601: NFRPENLVKL QMCESKLEKL WDGVHSLTGL RNMDLRGSEN LKEIPDLSLA TNLKKLDVSN CTSLVELSST IQNLNQLEEL QMERCENLEN LPIGINLESL 0701: YCLNLNGCSK LRSFPDISTT ISELYLSETA IEEFPTELHL ENLYYLGLYD MKSEKLWKRV QPLTPLMTML SPSLTKLFLS DIPSLVELPS SFQNLHNLEH 0801: LNIARCTNLE TLPTGVNLEL LEQLDFSGCS RLRSFPDIST NIFSLVLDGT GIEEVPWWIE DFYRLSFLSM IGCNNLQGVS LNISKLEKLE TVDFSDCEAL 0901: SHANWDTIPS AVAMATENIH SKLPVCIKFS NCFNLDHKAV LLQQSIFKQL ILSGGEMFSY FTHRTTGTSL TNIPLLHISP CQPFFRFRAC ALVDTESMDI 1001: GSVFFQVQVS CRFTDRLGNY LDSPYQHEVF AVLEKGSHMV ISDCCFPFNE DNAPLAELIY DHVDIQFHFT QENDELKLIG CGLRLSEADN DLGNEIDGSE 1101: EWEDCNDSGL GSESDNLEAE EDT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)