AT5G43740.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.965 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (CC-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: apoptosis, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G43730.1); Has 13811 Blast hits to 13486 proteins in 476 species: Archae - 7; Bacteria - 232; Metazoa - 616; Fungi - 57; Plants - 12812; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:17566010..17568598 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 98478.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.65 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.08 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 862 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLGWLVIPWN QIFTAACGCF LSDRNYIHMM ESNLDALQKT MEELKNGRDD LLGRVSIEED KGLQRLAQVN GWLSRVQIVE SEFKDLLEAM SIETGRLCLL 101: GYCSEDCISS YNYGEKVSKM LEEVKELLSK KDFRMVAQEI IHKVEKKLIQ TTVGLDKLVE MAWSSLMNDE IGTLGLYGMG GVGKTTLLES LNNKFVELES 201: EFDVVIWVVV SKDFQFEGIQ DQILGRLRSD KEWERETESK KASLIYNNLE RKKFVLLLDD LWSEVDMTKI GVPPPTRENG SKIVFTTRST EVCKHMKADK 301: QIKVACLSPD EAWELFRLTV GDIILRSHQD IPALARIVAA KCHGLPLALN VIGKAMSCKE TIQEWSHAIN VLNSAGHEFP GMEERILPIL KFSYDSLKNG 401: EIKLCFLYCS LFPEDSEIPK EKWIEYWICE GFINPNRYED GGTNHGYDII GLLVRAHLLI ECELTDNVKM HDVIREMALW INSDFGKQQE TICVKSGAHV 501: RMIPNDINWE IVRTMSFTCT QIKKISCRSK CPNLSTLLIL DNRLLVKISN RFFRFMPKLV VLDLSANLDL IKLPEEISNL GSLQYLNISL TGIKSLPVGL 601: KKLRKLIYLN LEFTGVHGSL VGIAATLPNL QVLKFFYSCV YVDDILMKEL QDLEHLKILT ANVKDVTILE RIQGDDRLAS SIRSLCLEDM STPRVILSTI 701: ALGGLQQLAI LMCNISEIRI DWESKERREL SPTEILPSTG SPGFKQLSTV YINQLEGQRD LSWLLYAQNL KKLEVCWSPQ IEEIINKEKG MNITKLHRDI 801: VVPFGNLEDL ALRQMADLTE ICWNYRTLPN LRKSYINDCP KLPEDIFVPL LPEKSPSRFF FF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)