AT5G39380.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.989 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Plant calmodulin-binding protein-related | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Plant calmodulin-binding protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Calmodulin-binding protein, plant (InterPro:IPR012417); BEST Arabidopsis thaliana protein match is: Plant calmodulin-binding protein-related (TAIR:AT5G15430.1); Has 1562 Blast hits to 1366 proteins in 187 species: Archae - 0; Bacteria - 45; Metazoa - 751; Fungi - 101; Plants - 192; Viruses - 10; Other Eukaryotes - 463 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:15759163..15760686 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 56417.60 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.99 | ||||||||||||||||||||||||
| GRAVY (calculated) | -1.02 | ||||||||||||||||||||||||
| Length | 507 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDEDIAKPFV TPENMMNKED GLNPGGDSTG KAMTSKPKEK KIPHYLRAST GSCHDLCKYG KRQIPVEKPW RSSTKKIFKK SLDDNLNETL KPGSSKMKKK 101: VREVEKNEGT DDSFEVIKRE VVKYQASGVS SGMRKPEVLI ISSCDETPVK QIKKKTTLSS KLKPSPDLGS RSSENVDALK PKVLKKSYSA LTTSKPKVNH 201: EKVVASPVLK PKMGKRNDGK DEDGKVKKGT VSSRVASKKA PVTPRASLSP RLSVRLAGSS SLRKSQSLKA ASSSSRQNQK PRPVNRTDEF NKQLDDYPVE 301: EKTLHVVEME TTNNVVSEND QNQQGFVEPF LPPLPPTQST PKDDECTVSE TEEYEYTSGS NEAESEEEEI GLSNGEKKPR AARKEGDSAD EAARKLRFRR 401: GTIVDPDTVG EKARKLKFRR GRGLGEDKAQ DAQVRRSFKK REDIREEEVN EDGEKVVLRH QDVQEKDAQG LFNNVIEETA SKLVEARKSK VKALVGAFET 501: VISLQES |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)