AT5G24380.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : YELLOW STRIPE like 2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
closest Arabidopsis homolog of Zea maize metal-phytosiderophore/metal-nicotianamine transporter ZmYS1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
YELLOW STRIPE like 2 (YSL2); FUNCTIONS IN: oligopeptide transporter activity; INVOLVED IN: oligopeptide transport, response to zinc ion, response to iron ion; LOCATED IN: plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: YELLOW STRIPE like 3 (TAIR:AT5G53550.2); Has 1729 Blast hits to 1686 proteins in 542 species: Archae - 19; Bacteria - 859; Metazoa - 0; Fungi - 253; Plants - 459; Viruses - 1; Other Eukaryotes - 138 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:8324098..8326525 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 72987.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.29 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.41 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 664 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MENERVEREQ SQFQEDEFID SRKPPPWRKQ ITVRAIVASL LIGIVYSVIC LKLNLTTGLV PNLNISSALL AFVFLKSWTK VLQKAGIATT PFTRQENTIA 101: QTCAVACYSI SLAGGFASYL LGLNRRTYEE TGVNTEGNNP RGIKEPGVGW MTSFLFVTSF IGLVVLVPLR KVMIIDYKLT YPSGTATAVL INGFHTSKGD 201: KTAKKQIRGF IKSFGLSFFW AFFGWFYSGG EKCGFSQFPT FGLQALDKTF YFDFSMTYVG AGMICSHLVN LSLLFGAILS WGIMWPLIAR LKGEWFPATL 301: KDNSMQGLNG YKVFICIALI LGDGLYNFVK ILFFTGRSFH SRLSKTNSIS TLVEVPEDST KESDNLKREN EVFVRESIPL WMACVGYLFF SLVSIIAIPL 401: MFPQLKWYFV LVAYLLAPSL SFCNAYGAGL TDMNMAYNYG KAALFVMAAL AGKNDGVVAG MVACGLIKSI VSVSADLMHD FKTGHLTQTS PRSMLVAQAI 501: GTAIGCVVAP LTFFLFYKAF DVGNQNGEYK APYAMIYRNM AIIGVQGPSA LPKHCLELCY GFFAFAVAAN LARDLLPDKP GKWIPLPMAM AVPFLVGGSF 601: AIDMCIGSLV VYVWKKVNRK KADVMVPAVA SGLICGDGLW ILPSSLLALA KVRPPICMNF TAAH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)