AT1G19230.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.892 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Riboflavin synthase-like superfamily protein | ||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Riboflavin synthase-like superfamily protein; FUNCTIONS IN: in 7 functions; INVOLVED IN: defense response; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Cytochrome b245, heavy chain (InterPro:IPR000778), EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-hand-like domain (InterPro:IPR011992), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130), Ferric reductase, NAD binding (InterPro:IPR013121), NADPH oxidase Respiratory burst (InterPro:IPR013623), FAD-binding 8 (InterPro:IPR013112), EF-HAND 2 (InterPro:IPR018249), Riboflavin synthase-like beta-barrel (InterPro:IPR017938); BEST Arabidopsis thaliana protein match is: respiratory burst oxidase protein F (TAIR:AT1G64060.1); Has 2473 Blast hits to 2332 proteins in 402 species: Archae - 8; Bacteria - 385; Metazoa - 719; Fungi - 641; Plants - 520; Viruses - 0; Other Eukaryotes - 200 (source: NCBI BLink). | ||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:6644189..6649149 | ||||||||||||||||
| Molecular Weight (calculated) | 104569.00 Da | ||||||||||||||||
| IEP (calculated) | 8.49 | ||||||||||||||||
| GRAVY (calculated) | -0.20 | ||||||||||||||||
| Length | 926 amino acids | ||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKLSPLSFST SSSFSHADGI DDGVELISSP FAGGAMLPVF LNDLSRNSGE SGSGSSWERE LVEVTLELDV GDDSILVCGM SEAASVDSRA RSVDLVTARL 101: SRNLSNASTR IRQKLGKLLR SESWKTTTSS TAGERDRDLE RQTAVTLGIL TARDKRKEDA KLQRSTSSAQ RALKGLQFIN KTTRGNSCVC DWDCDCDQMW 201: KKVEKRFESL SKNGLLARDD FGECVGMVDS KDFAVSVFDA LARRRRQKLE KITKDELHDF WLQISDQSFD ARLQIFFDMA DSNEDGKITR EEIKELLMLS 301: ASANKLAKLK EQAEEYASLI MEELDPENFG YIELWQLETL LLQRDAYMNY SRPLSTTSGG VNNWQRSWVL LVWVMLMAIL FVWKFLEYRE KAAFKVMGYC 401: LTTAKGAAET LKLNMALVLL PVCRNTLTWL RSTRARACVP FDDNINFHKI IACAIAIGIL VHAGTHLACD FPRIINSSPE QFVLIASAFN GTKPTFKDLM 501: TGAEGITGIS MVILTTIAFT LASTHFRRNR VRLPAPLDRL TGFNAFWYTH HLLVVVYIML IVHGTFLFFA DKWYQKTTWM YISVPLVLYV AERSLRACRS 601: KHYSVKILKV SMLPGEVLSL IMSKPPGFKY KSGQYIFLQC PTISRFEWHP FSITSAPGDD QLSVHIRTLG DWTEELRRVL TVGKDLSTCV IGRSKFSAYC 701: NIDMINRPKL LVDGPYGAPA QDYRSYDVLL LIGLGIGATP FISILKDLLN NSRDEQTDNE FSRSDFSWNS CTSSYTTATP TSTHGGKKKA VKAHFYWVTR 801: EPGSVEWFRG VMEEISDMDC RGQIELHNYL TSVYDEGDAR STLIKMVQAL NHAKHGVDIL SGTRVRTHFA RPNWKEVFSS IARKHPNSTV GVFYCGIQTV 901: AKELKKQAQD MSQKTTTRFE FHKEHF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)