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AT5G19580.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glyoxal oxidase-related protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
glyoxal oxidase-related protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Galactose oxidase, beta-propeller (InterPro:IPR015916), Immunoglobulin-like fold (InterPro:IPR013783), Immunoglobulin E-set (InterPro:IPR014756), Glyoxal oxidase, N-terminal (InterPro:IPR009880), Domain of unknown function DUF1929 (InterPro:IPR015202); BEST Arabidopsis thaliana protein match is: glyoxal oxidase-related protein (TAIR:AT1G67290.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHN3eggNOG:ENOG41110V0EMBL:CP002688EnsemblPlants:AT5G19580
EnsemblPlants:AT5G19580.1entrez:832078Gene3D:2.130.10.80Gene3D:2.60.40.10
GeneID:832078Gramene:AT5G19580.1hmmpanther:PTHR32208hmmpanther:PTHR32208:SF29
InParanoid:F4K172InterPro:IPR009880InterPro:IPR011043InterPro:IPR013783
InterPro:IPR014756InterPro:IPR015202InterPro:IPR015916KEGG:ath:AT5G19580
OMA:WNLVSENPaxDb:F4K172Pfam:PF07250Pfam:PF09118
PRIDE:F4K172ProteinModelPortal:F4K172Proteomes:UP000006548RefSeq:NP_197459.1
SMR:F4K172SUPFAM:0047741SUPFAM:SSF50965SUPFAM:SSF81296
TAIR:AT5G19580TMHMM:TMhelixUniGene:At.19923UniProt:F4K172
Coordinates (TAIR10) chr5:-:6607595..6609517
Molecular Weight (calculated) 65000.70 Da
IEP (calculated) 9.93
GRAVY (calculated) -0.20
Length 594 amino acids
Sequence (TAIR10)
(BLAST)
001: MKASTRVIWT ISVLMLAAVS EAIFPLPFLP FLPGFNNGFR DNEAVKVAKP QPAGAVGGKA ARRQRGGGLD AQTTWGGKWE LFLENSGVSG MHAILMPVIN
101: KVQYYDATIW RISKIKLPPG VPCHVVDAKT NKVDCWAHSI LMDVNTGALK PLGLSTDTWC SSGGLTVNGT LVSTGGYGGG ANTARYLSSC ENCKWEEYPQ
201: ALAAKRWYST QATLPDGKFF VIGGRDALNY EYIPEEGQNN RKLFDSLLLR QTDDPEENNL YPFVWLNTDG NLFIFANNRS ILLSPKTNQV IKEFPQLPGG
301: ARNYPGSGSS ALLPIQLYVK NPKVIPAEVL VCGGSKQDAY YKAGKKIYEP ALQDCARIRI NSAKPRWKTE MMPTPRIMSD TVILPNGDIL LVNGAKRGCS
401: GWGYGKDPAF APLLYKPHAA RGKRFRQLKP TTIPRMYHSS AIILPDGKVL VGGSNTNDGY KYNVEFPTEL RVEKFSPPYL DPALANIRPK IVTTGTPKQV
501: KYGQFFNVKV DLKEKGATKG NLKVTMLAPA FTTHSISMNM RMLILGVNNV KPAGAGYDIQ AVAPPNGNIA PPGYYLIFAI YKGVPSTGEW IQVV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)