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AT5G03780.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : TRF-like 10
Curator
Summary (TAIR10)
Encodes a protein whose sequence is similar to human telomere proteins. This belongs to TRFL family 2, which do not show DNA binding in vitro.
Computational
Description (TAIR10)
TRF-like 10 (TRFL10); FUNCTIONS IN: DNA binding; INVOLVED IN: response to salicylic acid stimulus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (TAIR:AT1G01150.1); Has 259 Blast hits to 250 proteins in 74 species: Archae - 0; Bacteria - 8; Metazoa - 88; Fungi - 19; Plants - 87; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JP16eggNOG:ENOG41114QMEMBL:AB493735EMBL:CP002688
EnsemblPlants:AT5G03780EnsemblPlants:AT5G03780.1entrez:831726Gene3D:1.10.10.60
GeneID:831726GO:GO:0000783GO:GO:0003691GO:GO:0009751
Gramene:AT5G03780.1hmmpanther:PTHR21717hmmpanther:PTHR21717:SF18HOGENOM:HOG000200791
InterPro:IPR009057InterPro:IPR017877KEGG:ath:AT5G03780OMA:FHETRTP
Pfscan:PS50090PhylomeDB:C0SVN2PROSITE:PS50090Proteomes:UP000006548
RefSeq:NP_195998.2STRING:3702.AT5G03780.1SUPFAM:SSF46689TAIR:AT5G03780
tair10-symbols:TRFL10UniGene:At.33228UniProt:C0SVN2
Coordinates (TAIR10) chr5:-:999266..1000947
Molecular Weight (calculated) 47043.30 Da
IEP (calculated) 5.51
GRAVY (calculated) -0.84
Length 420 amino acids
Sequence (TAIR10)
(BLAST)
001: MIEKKLSKMK MRTKSIPVRS SRKSLDSLLD DEANENTQCD ERDVPHKKRR CLGTSETTDR GGSVEPLLDL DACIVCEVSD ERVSRCCGVD CLLSFHGECL
101: YADLGSTSSS SSSSSEDVSN PFCPYCWLKI VALKSKTLRE KTVEAEKAVC KYLDKEMKSR DEDITLSGDE IGNQEQSTDI VSDHELQGEK DGCSSKPDAD
201: QGKVGTGKVI DEVGASEKVA TEKFQDAEDD ETAKDQGTRI LNTGAGKKRE VSSFLSMQES FSAKEQDQVQ QNEKRRRRGL KIIDSDISSK GSSNERNGED
301: VTEQVTSSVQ VTSPSGRMRN QQATTKVVAK SKTVRDISFF KMDQRRRLLW TYEEEEMLKV GVEKFAAEAN KNMPWRKILE MGEKVFHETR TPADLKDKWR
401: SMVKIMNKNE QGSTLTPTAM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)