AT4G37900.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.607 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (duplicated DUF1399) | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (duplicated DUF1399); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1399 (InterPro:IPR009836); BEST Arabidopsis thaliana protein match is: Protein of unknown function (duplicated DUF1399) (TAIR:AT2G22660.2); Has 24258 Blast hits to 6156 proteins in 640 species: Archae - 4; Bacteria - 13513; Metazoa - 5207; Fungi - 694; Plants - 2964; Viruses - 274; Other Eukaryotes - 1602 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:17821737..17824445 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 86606.10 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.67 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||||||||||||||
| Length | 787 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDKEKEQTLE WNEAQKIDIS VDLLAAAKKH LLFLGAVDRN RCLYDGPALQ RAIYRYNAYW LPLLAQYTES SSICQGPLVP PLDCEWVWHC HRLNPVRYKT 101: DCEQFYGRVL DNSGVVSSVN GNCKSQTETL WKRLYPTEPY DLDFANAISE PADVSALEKC TTYDLVLAVK RQSPFFYQVS RAHVDNDVFL QEAVARYKAF 201: LYLIKGNRER SIKLFCVPTY DIDLIWHTHQ LHAISYCNDL TKMIGKVLEH DDTDSDRSKG KKLDTGFSGT TAQWEETFGR RYWKAGAMNR GNTPKPVTTS 301: PYVCSGKKSI AKEEESQNVI QYPEVKVIEV ILEIVGVKNL PDAHKGKVFV LFSKTQPDSL FNAERRLTVL SESCGEKQVA LFQCEPTGEL SFQLMSSKSK 401: SLGFTSLSFS EFLSPVTKLS VEKWLELTPT KRGKADDPNP ISLRVAVSFT PPTRSPTVLH LVQARPSLKG SCFLPMLRKV RLAKSFTRVV DETETEVINL 501: QMRNSNDAAP KGDRRQVIGV KECGETYVLA EYDGTFWSLL DSKWSLKQTC NPATDGPLFE LSGTRMVKVY SGRKLEYEPK HCSKLRSEQD FMTAVEFSKQ 601: HPYGKAVGLL DLKFGSIEAN EKWLVLPGMV SSFILSDLLK KEGFSAAAKD TVKANGITEE STEIDVLSQE KLEEETMMDV DTTTPVAVAA EKINGGARCF 701: SKELSGNMIE EEGGHCGGCG GCGGCGGGGG CGGGGRCGGM TKIEGCGGGS CTGGSTGCGN CGGGCGNMMK NNANGNAPSV ENDAVTA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)