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AT4G37050.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PATATIN-like protein 4
Curator
Summary (TAIR10)
Patatin-related phospholipase A. Expressed in the floral gynaecium and is induced by abscisic acid (ABA) or phosphate deficiency in roots.
Computational
Description (TAIR10)
PATATIN-like protein 4 (PLP4); CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (TAIR:AT4G37070.2); Has 2044 Blast hits to 2033 proteins in 371 species: Archae - 0; Bacteria - 489; Metazoa - 210; Fungi - 168; Plants - 876; Viruses - 0; Other Eukaryotes - 301 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-160-MONOMEREC:3.1.1.-eggNOG:COG3621eggNOG:KOG0513
EMBL:AL161590EMBL:AY099596EMBL:AY128840EMBL:CP002687
EMBL:Z99707EnsemblPlants:AT4G37050EnsemblPlants:AT4G37050.1entrez:829859
GeneID:829859Genevisible:O23181GO:GO:0004620GO:GO:0005737
GO:GO:0006952GO:GO:0009737GO:GO:0016020GO:GO:0016042
GO:GO:0047372Gramene:AT4G37050.1hmmpanther:PTHR32176HOGENOM:HOG000189358
InParanoid:O23181InterPro:IPR002641InterPro:IPR016035KEGG:ath:AT4G37050
OMA:YSEAIHDPaxDb:O23181Pfam:O23181Pfam:PF01734
PhylomeDB:O23181PIR:F85437PRIDE:O23181PRO:PR:O23181
ProteinModelPortal:O23181Proteomes:UP000006548RefSeq:NP_195422.3SMR:O23181
STRING:3702.AT4G37050.1SUPFAM:SSF52151TAIR:AT4G37050tair10-symbols:AtPLAIVC
tair10-symbols:PLA Vtair10-symbols:PLP4UniGene:At.4646UniGene:At.48948
UniProt:O23181
Coordinates (TAIR10) chr4:-:17457261..17459642
Molecular Weight (calculated) 47206.50 Da
IEP (calculated) 6.13
GRAVY (calculated) -0.20
Length 428 amino acids
Sequence (TAIR10)
(BLAST)
001: MDTERGSISS SEISRTAHLQ DRTVACLPPS YGQLVTILSI DGGGIRGIIP GTILAYLESQ LQELDGEEAR LVDYFDVISG TSTGGLIVAM LTAQDQSGGH
101: SRNSNRPLFE AKEIVPFYLK HSPKIFPQPR GIFCGWGETI VRLVGGPKFN GKYLHDLVEG FLGDTKLTQS LTNVVIPCFD IKKLQPVIFS SYQAVNNQAM
201: NAKLSDICIS TSAAPTFFPA HRFTNEDSEG IKHEFNLIDG GIAANNPTLC AIAEVTKQII KKNPVMGDIS PLDFTRFLVI SIGTGSIRNQ EKYNAKMASK
301: WGLMCWVFES GSTPILDCYS EAIHDMVDYQ SSVVFQALRS EKNYLRIDDD SLKGDLGSVD ISTEKNMEGL VEVGEALLKK RVSRVNLESG HYQPISENVT
401: NEEALKRFAK VLSEERKLRE SRSPKLKI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)