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AT4G36840.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.685
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Galactose oxidase/kelch repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT3G24610.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
DNASU:829837eggNOG:ENOG4110X8DeggNOG:KOG1072EMBL:AK118810
EMBL:CP002687EnsemblPlants:AT4G36840EnsemblPlants:AT4G36840.1entrez:829837
Gene3D:2.120.10.80GeneID:829837Gramene:AT4G36840.1hmmpanther:PTHR24414
hmmpanther:PTHR24414:SF23InterPro:IPR006652InterPro:IPR015915KEGG:ath:AT4G36840
OMA:YIFRRTSPfam:PF01344PhylomeDB:Q8GWJ1Proteomes:UP000006548
RefSeq:NP_195402.3SMR:Q8GWJ1STRING:3702.AT4G36840.1SUPFAM:0052715
TAIR:AT4G36840UniGene:At.31293UniProt:Q8GWJ1
Coordinates (TAIR10) chr4:+:17352166..17352882
Molecular Weight (calculated) 27003.00 Da
IEP (calculated) 6.91
GRAVY (calculated) -0.39
Length 238 amino acids
Sequence (TAIR10)
(BLAST)
001: MKMARASASA SLIDGKIYVF GGCPEDADSS NWAEVFDPVY QTWGIFNTPK MAHSINQSVV IEEKKVYAVD EEDQSFSFLP SEGRIWKSGK KDSKVGSRHD
101: WCVIGKLLYC RATRGRILWC QPDELDWKEV KGLEQLQLYL SGTRYIFRRT SDKRPSKTNV KYDIRKISSN SAGNIVIFGN AHIGDPECVE LWSAEISMER
201: REGGEIWGKI EWSNVVFKLD PLSNSYSVDV LFSASVHL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)