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AT5G24318.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : O-Glycosyl hydrolases family 17 protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT3G55430.1); Has 2814 Blast hits to 2741 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 2803; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IK21eggNOG:ENOG410YCVQEMBL:CP002688EnsemblPlants:AT5G24318
EnsemblPlants:AT5G24318.1entrez:3770717ExpressionAtlas:F4KH28Gene3D:3.20.20.80
GeneID:3770717GO:GO:0004553GO:GO:0005975Gramene:AT5G24318.1
hmmpanther:PTHR32227hmmpanther:PTHR32227:SF92InParanoid:F4KH28InterPro:IPR000490
InterPro:IPR012946InterPro:IPR013781InterPro:IPR017853KEGG:ath:AT5G24318
OMA:KLLYTNMPaxDb:F4KH28Pfam:PF00332Pfam:PF07983
PRIDE:F4KH28PROSITE:PS00587ProteinModelPortal:F4KH28Proteomes:UP000006548
RefSeq:NP_001031936.1scanprosite:PS00587SMART:SM00768SMR:F4KH28
SUPFAM:SSF51445TAIR:AT5G24318TMHMM:TMhelixUniGene:At.51413
UniProt:F4KH28
Coordinates (TAIR10) chr5:-:8282285..8283956
Molecular Weight (calculated) 50768.50 Da
IEP (calculated) 5.76
GRAVY (calculated) -0.08
Length 458 amino acids
Sequence (TAIR10)
(BLAST)
001: MNYVLPFFSL SMFTIVGVLL ILSTGSEASI GVNYGTLANN LPPPQQVAEF LLHSTVINRI RLFDTDPQIL QAFANTGIAV TVTVPNDQIP HLTNLSSAKQ
101: WISDHIQPHF PSTNIIRILV GNEVISTADH LLIRTLIPAM QSLHTALVSA SLHRRIQIST PHSLGTLTNS TPPSSAKFRR GYDAQVLKPL LSFLRSTSSP
201: FVVNPYPFFG YSIETLDFAL FRPNPGLFDQ HTKLLYTNML DAQLDSVYSA MDKLGFSDVE IVIGEIGWPS EGDIDQIGVD VDTAAEFNKN LIARVDSGTG
301: TPLMPNRTFE TYIFALFNEN LKSGPTSERN FGIFRSDLTP IYDIGILRPT FRSSDPVYNP RSPVRGSSSK RWCVTKAGAE TVALQRNIDY VCGLGLDCRP
401: INEGGLCYLP NTVKAHSKYA MNLYYQTMEK HEFDCDFDNT GEITTIDPSY GNCEYQAN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)