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AT4G31060.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Integrase-type DNA-binding superfamily protein
Curator
Summary (TAIR10)
encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.
Computational
Description (TAIR10)
Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G19210.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JE51eggNOG:ENOG41115GMEMBL:AL022198EMBL:AL161578
EMBL:AY560884EMBL:BT011774EMBL:BT012399EMBL:CP002687
EnsemblPlants:AT4G31060EnsemblPlants:AT4G31060.1entrez:829233ExpressionAtlas:Q6NLD5
Gene3D:3.30.730.10GeneID:829233Genevisible:Q6NLD5GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351Gramene:AT4G31060.1
hmmpanther:PTHR31985hmmpanther:PTHR31985:SF25HOGENOM:HOG000097077InParanoid:Q6NLD5
InterPro:IPR001471InterPro:IPR016177KEGG:ath:AT4G31060OMA:IQTIATN
PaxDb:Q6NLD5Pfam:PF00847Pfam:Q6NLD5Pfscan:PS51032
PhylomeDB:Q6NLD5PIR:G85363PRIDE:Q6NLD5PRINTS:PR00367
PRO:PR:Q6NLD5PROSITE:PS51032ProteinModelPortal:Q6NLD5Proteomes:UP000006548
RefSeq:NP_567867.1SMART:SM00380SMR:Q6NLD5STRING:3702.AT4G31060.1
SUPFAM:SSF54171TAIR:AT4G31060UniGene:At.31779UniGene:At.74201
UniProt:C0SVK9UniProt:Q6NLD5
Coordinates (TAIR10) chr4:+:15116896..15117459
Molecular Weight (calculated) 20811.70 Da
IEP (calculated) 6.79
GRAVY (calculated) -0.38
Length 187 amino acids
Sequence (TAIR10)
(BLAST)
001: MPPSPPKSPF ISSSLKGAHE DRKFKCYRGV RKRSWGKWVS EIRVPKTGRR IWLGSYDAPE KAARAYDAAL FCIRGEKGVY NFPTDKKPQL PEGSVRPLSK
101: LDIQTIATNY ASSVVHVPSH ATTLPATTQV PSEVPASSDV SASTEITEMV DEYYLPTDAT AESIFSVEDL QLDSFLMMDI DWINNLI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)