AT4G21065.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.990 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G33170.1); Has 42394 Blast hits to 14278 proteins in 275 species: Archae - 0; Bacteria - 13; Metazoa - 126; Fungi - 79; Plants - 41597; Viruses - 0; Other Eukaryotes - 579 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:11246375..11247763 | ||||||||||||
| Molecular Weight (calculated) | 52178.30 Da | ||||||||||||
| IEP (calculated) | 7.53 | ||||||||||||
| GRAVY (calculated) | -0.12 | ||||||||||||
| Length | 462 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MADVRLGETI HSVVIRSGFG SLIYVQNSLL HLYANCGDVA SAYKVFDKMP EKDLVAWNSV INGFAENGKP EEALALYTEM NSKGIKPDGF TIVSLLSACA 101: KIGALTLGKR VHVYMIKVGL TRNLHSSNVL LDLYARCGRV EEAKTLFDEM VDKNSVSWTS LIVGLAVNGF GKEAIELFKY MESTEGLLPC EITFVGILYA 201: CSHCGMVKEG FEYFRRMREE YKIEPRIEHF GCMVDLLARA GQVKKAYEYI KSMPMQPNVV IWRTLLGACT VHGDSDLAEF ARIQILQLEP NHSGDYVLLS 301: NMYASEQRWS DVQKIRKQML RDGVKKVPGH SLVEVGNRVH EFLMGDKSHP QSDAIYAKLK EMTGRLRSEG YVPQISNVYV DVEEEEKENA VVYHSEKIAI 401: AFMLISTPER SPITVVKNLR VCADCHLAIK LVSKVYNREI VVRDRSRFHH FKNGSCSCQD YW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)