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AT4G05440.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.964
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : temperature sensing protein-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo sac development arrest 35 (EDA35); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: polar nucleus fusion; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cell division cycle, Cdc123 (InterPro:IPR016525), D123 (InterPro:IPR009772); Has 393 Blast hits to 382 proteins in 184 species: Archae - 0; Bacteria - 4; Metazoa - 112; Fungi - 157; Plants - 55; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).
Protein Annotations
DNASU:825894eggNOG:ENOG410XSVCeggNOG:KOG2983EMBL:AL161503
EMBL:CP002687EnsemblPlants:AT4G05440EnsemblPlants:AT4G05440.1entrez:825894
ExpressionAtlas:Q9M0V1GeneID:825894GO:GO:0001732GO:GO:0005737
GO:GO:0006417GO:GO:0007050GO:GO:0007346GO:GO:0010197
GO:GO:0051301Gramene:AT4G05440.1hmmpanther:PTHR15323hmmpanther:PTHR15323:SF6
HOGENOM:HOG000231938InterPro:IPR009772OMA:PKDAAFMPANTHER:PTHR15323:SF6
Pfam:PF07065PhylomeDB:Q9M0V1PIR:D85068PIRSF:PIRSF007807
Proteomes:UP000006548RefSeq:NP_192453.1SMR:Q9M0V1STRING:3702.AT4G05440.1
TAIR:AT4G05440tair10-symbols:EDA35UniGene:At.33851UniProt:Q9M0V1
Coordinates (TAIR10) chr4:+:2757274..2758275
Molecular Weight (calculated) 38779.50 Da
IEP (calculated) 4.27
GRAVY (calculated) -0.47
Length 333 amino acids
Sequence (TAIR10)
(BLAST)
001: MKEDEVNRCQ IQNWYPRFKS LTIKTKFHKL PESFINYLID DSGPFLLPHS VTNEDAMPNR VHNFEEEDDF QVPEEASDDE PLNRPSFPEL EIEIRESIET
101: LGGTIIPKLN WSSPKDAAWI SPSQNLSCTC FNEIALLFRS SDSLTHDLFN AYDSCSDKVS SRPESFYLAL RKWYPSLKPE MEFRCFVKSN ELVGICQREV
201: TTFYPVLLNE KDLLKGLIEE FFDDKIRFEF ESENYTFDVY VTKERRVKLI DFNTWCGSTL PLMYTWEELE KIHGECDELE LRIVESRLSV LPGLKTAVPY
301: DYLDVSAGSG WAQVLKIVEE EFQKDDQSSD EVA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)