AT4G02850.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.808 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : phenazine biosynthesis PhzC/PhzF family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
phenazine biosynthesis PhzC/PhzF family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Phenazine biosynthesis PhzC/PhzF protein (InterPro:IPR003719); BEST Arabidopsis thaliana protein match is: Phenazine biosynthesis PhzC/PhzF protein (TAIR:AT1G03210.1); Has 3282 Blast hits to 3279 proteins in 1066 species: Archae - 40; Bacteria - 2414; Metazoa - 118; Fungi - 78; Plants - 90; Viruses - 0; Other Eukaryotes - 542 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:1266535..1268569 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 33760.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.76 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.12 | ||||||||||||||||||||||||||||||||||||
| Length | 306 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAMLVKKPVK YFMVDAFTES AFKGNQAAVC FLEEDHERDD VWLQSMASEF DLPLTCFLIP IPGSEPPRFL LRWFTAVAEM DICGHATLAS AHSIFSNSLV 101: GSSDTVEFST NSGILTAKRL SDCDSKRSFL IEMNFPVITT CEYSSKDVSI FSKALNGATI VDVRETKTDR LIFKPLIGAF KTTSTDQIIV VLSSWESVIE 201: FQPRVDDIVK CPGKVMIVTA AAPQGSPFDF CSRLFAPKLG LNEDSVCGSA HCSLAHYWSL KMNKCDFVAF AASQRSGTLK VHYDKEKQRV LLTGKAVTVM 301: KGSILV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)