AT4G00440.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF3741) | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (TAIR:AT2G45900.1); Has 1239 Blast hits to 1045 proteins in 162 species: Archae - 0; Bacteria - 74; Metazoa - 262; Fungi - 79; Plants - 239; Viruses - 0; Other Eukaryotes - 585 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:195176..198119 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 94550.20 Da | ||||||||||||||||||||||||
| IEP (calculated) | 5.35 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.74 | ||||||||||||||||||||||||
| Length | 831 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAKKTQRRAA ARQEREQLGC MWGFMNMFSF RHGPLAHKLL LDQKHASGNP KNNELNKSKF REKDAQETHV GEERNITITI IKPSVKKLIA EELSIDKEIK 101: KQRENAEAGQ LSDSELEGRR RKNQRRKNKT RKKSCDNFSH MNLVDSEEPL VQRRNRRSAR SVDIDNMIEE FYSEIHRRST SHAKNDEDYK EKLRELVKFL 201: ISQKLLHGNR PRGNSEILTS KDLMEVFQIL GSDEELFLKL LQDPEILVPR EKGAESLSLV ESEQSSLADK KWSSFFRRKD EPQEECEASD RIFILKPRSA 301: SFSSPDIGNS RGSSPDSHLM GNKLQNERNS SHYFLSEIKR KLKHAIKKEQ PAGGFGEGFP KTKDHFFLER MAKPSTSQKK SHSEDDKKQR VSNIYTEAKK 401: HLSEMLNNGD LDSKSTSRQV QRSLGRILSF PEYLSPLNSP GRRWEKSSTA HKKSASADFI NLVNIKKETH ASQPEENTDI QVCNLSKEPD DSIQPIASEP 501: NEKSVDIEDE TANEDNMFSA GSADDVMIPN ELDEVPEEAS STLIGDLSKV EAQDEQRDSI NSKQTSLEES QPPLSSSVAS PSHCLAQTEE CKSAITDFPE 601: WSSPISVLEP LFVEDDISPA KMRSQSGEAE VQPWCIHFDE KDPAPTYREN SVTSDKELVF KYVKAVLDAV DSDIEELYLK AQFSDQLLEP ALISNIPFCP 701: NQLCPDHELL FDCINEALME LCCCPPWASF VTPRTRVFST VKSIIHEVQE AVYWHLLPLP LPHALDQIVR KDMARAGNWL DIRCDIDCIG FETSELILNE 801: LLEELILNNT EHSLVSPELK TDGSILILER S |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)