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AT3G54720.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.965
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Peptidase M28 family protein
Curator
Summary (TAIR10)
Encodes glutamate carboxypeptidase. Various alleles show-increased cotyledon number and rate of leaf initiation, show transformation of leaves to cotyledons, altered flowering time and photomorphogenesis and an increased level of cytokinin biosynthesis. Involved in ethylene enhanced hypocotyl elongation in the light. Strong genetic interaction between TGH and AMP1.
Computational
Description (TAIR10)
ALTERED MERISTEM PROGRAM 1 (AMP1); CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Transferrin receptor-like, dimerisation (InterPro:IPR007365), Peptidase M28 (InterPro:IPR007484); BEST Arabidopsis thaliana protein match is: Peptidase M28 family protein (TAIR:AT5G19740.1); Has 3363 Blast hits to 3338 proteins in 594 species: Archae - 10; Bacteria - 1310; Metazoa - 699; Fungi - 446; Plants - 316; Viruses - 0; Other Eukaryotes - 582 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2234eggNOG:KOG2195EMBL:BT046200EnsemblPlants:AT3G54720
EnsemblPlants:AT3G54720.1entrez:824637ExpressionAtlas:B5X581Gene3D:1.20.930.40
GeneID:824637GO:GO:0010081GO:GO:0016021Gramene:AT3G54720.1
hmmpanther:PTHR10404hmmpanther:PTHR10404:SF42InterPro:IPR007365InterPro:IPR007484
KEGG:ath:AT3G54720KO:K01301merops:M28.007OMA:WIPRRTI
PaxDb:B5X581Pfam:PF02225Pfam:PF04253Pfam:PF04389
Pfam:Q9M1S8PRIDE:B5X581ProteinModelPortal:B5X581RefSeq:NP_567007.1
SMR:B5X581STRING:3702.AT3G54720.1SUPFAM:SSF47672SUPFAM:SSF52025
SUPFAM:SSF53187TAIR:AT3G54720tair10-symbols:AMP1tair10-symbols:COP2
tair10-symbols:HPTtair10-symbols:MFO1tair10-symbols:PTTMHMM:TMhelix
UniGene:At.1213UniProt:B5X581UniProt:Q9M1S8
Coordinates (TAIR10) chr3:-:20254852..20257815
Molecular Weight (calculated) 77157.50 Da
IEP (calculated) 6.89
GRAVY (calculated) -0.06
Length 705 amino acids
Sequence (TAIR10)
(BLAST)
001: MSQPLTTRPT VTGISIIPFR QPPPLCSFLF VIVLFVATFY TLHHPDAVTP PLLFSRNAYN ALRLRRLFLS SASNATISSY LRELTRHPHL AGTKPSLDTL
101: HYVFNHFQSL GLETHVAEYE ALLSYPTHIS VTASFSNTTT LEFDLNDVPG DSPVVRPYHA YSPSGSAQGN VVFVNHGEER DYHALESIGV SVKGCVVLAR
201: KGENLGRGAI VKIAEAKGAL GVLIYAENDG GGFGGIERGT VMRGIGDPVS PGWPGVVGGE KLSLDDELVT RRFPKIPSLP LSLRNAEIIL ASLGGARAPL
301: EWRNSGRVGP GQRVGPGRMV INMTFQGEMK MKKINNVVVT IRGSEEADRY VILGNHRDAW TYGAVDPNSG TSALLDISRR FALLLKSGWR PRRTILLCSW
401: DAEEFGMIGS TEWIEENVLN LGASAVAYLN VDCAVQGSGF FAGATPQLDG LLVDVLKLVQ DPDAVGLTVE ETFKSQNNII QRLSRVDSDF SGFLHHAGIP
501: SIDMYYGADY PVYHTAFDSY DWMIHNADPL FHRHVAMAGI WGLLGILLAD EPLIPFDYIS YADQLQAHRD KLSKLLEGKV SVNPLSMAIQ EFSLVAKEAA
601: DEAKKLKGKS YSKNDVAAAA KRRELNDRLM LVERGFLDAE GIKGKEWFKH LVYGPAAEPE SKLGFFPGIA DAIAMNASEG IIEHEIWRVA RAIQRASKAL
701: KGGFT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)