AT3G49860.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.755 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ADP-ribosylation factor-like A1B | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ADP-ribosylation factor-like A1B (ARLA1B); FUNCTIONS IN: GTP binding; INVOLVED IN: intracellular protein transport, protein transport, small GTPase mediated signal transduction; LOCATED IN: intracellular; EXPRESSED IN: hypocotyl, male gametophyte, root, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), Ras small GTPase, Rab type (InterPro:IPR003579), Small GTPase SAR1-type (InterPro:IPR006687), Ras small GTPase, Ras type (InterPro:IPR003577), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ADP-ribosylation factor-like A1C (TAIR:AT3G49870.1); Has 16899 Blast hits to 16895 proteins in 575 species: Archae - 10; Bacteria - 254; Metazoa - 7961; Fungi - 2407; Plants - 2569; Viruses - 3; Other Eukaryotes - 3695 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:18491261..18492165 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 19489.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.70 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.03 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 176 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTLQPNLQAK EMELSLVGLQ NSGKTSLVNV VATGEYSEDM IPTVGFNMRK VTKENVAIRL WDLGGQPRFR CMWERYCRAV SMIVYVVDAA DTENLSVSRS 101: ELHDLLSNAS LIGIPLLVLG NKIDIHGALS KEALTEEMGL SSVTSREVCC LMISCKNPTT IDQLTDWLVN HSKSKN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)