AT3G49400.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transducin/WD40 repeat-like superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, sperm cell, flower, cultured cell; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); Has 959 Blast hits to 868 proteins in 197 species: Archae - 0; Bacteria - 241; Metazoa - 222; Fungi - 181; Plants - 154; Viruses - 0; Other Eukaryotes - 161 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:18319249..18324373 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 99721.70 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.63 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||||||||||
| Length | 892 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASRFQEASL VTSPSYPNAV AWSSENLIAV AAGHLVIIIN PALPTGPRGL ITISDAELYQ IGRVRSQDLL TGGLLPSSLK RERSPCVRSL SWSEIGMSPN 101: HGCLLAVCTA EGRVKLYRPP YSDFCAEWIE IVDISKMLYE NLSSMNFGES KNPSTSLSKD QVVEHDHEED ERISSLKARK RRKTSANNIN LHEKNYTDRA 201: SCSKQDSKAE HNVLEIEVYK QASNGQDRRS LPKALKKCSQ EISPQTYVSR EALLSSHSVA WSSLLRFSSE SSCGNMLRFS LLAIGSKSGS VSIWKVHAPE 301: CYHIERSNVS PMVELTAIVQ THSSWVSTMS WGIFGCDSSN PQVVLVTGSC DGSVKIWMSN KEDLQNSVEV YKSSFFLLKE VVAVNPVQVS TLSFVVSNHY 401: NAMHLAIGKG SGSFEVWKCE ISTRKFEQIV STNAHNQVVT GLAWSYDGRC LYSCSQDNYV RSWILCENAI SEVPIPANTP GLSSTTDLPD DFLSCLGVAL 501: SPGNLAVALV RNFNVELLNP MYQARSQKAA VEFLWNGAQQ SGESEDSTET VTEAILGFSK NEFANWESNI LWSLKEFNYL NKPLVLWDMV AAMLAFKQSM 601: PEFVELVLTK WLSVSYLGFH DDISMEDLVP KITKRFSDVP SRLLHILNVI SRRVMLSELK TEEINRKLQG QRTNDEGEID LWLKLLQESE RELRERLVGL 701: SFSAYLLAES SQGTISPPSW NWRPAGLALL QQWVEINRDI VHSQLETLSL EVKSSRTRSS NSTETALEEE KCPYCAAPVN FHSAEEAFCE SSHQKKKKSK 801: DKERCDESHK LERCCVSMQV CPPTPLWFCK CCNRMTLELA PETLFALPSF PSDLKSLPKS SFSKVASKPF CLFCGVLLQR KQPEFLLSAS PV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)