AT3G32940.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.841 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA-binding KH domain-containing protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNA-binding KH domain-containing protein; FUNCTIONS IN: RNA binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087); BEST Arabidopsis thaliana protein match is: splicing factor-related (TAIR:AT5G51300.3); Has 1765 Blast hits to 1598 proteins in 251 species: Archae - 0; Bacteria - 25; Metazoa - 867; Fungi - 350; Plants - 198; Viruses - 11; Other Eukaryotes - 314 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:13491089..13493630 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 66483.40 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.44 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.55 | ||||||||||||||||||||||||||||
| Length | 607 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTSTSAAKIS MFGAKSGFVI PKNKLSGSLI PIFQRGNKTL GSADSDTGPP SKLGKKRKTK WAPDLSQDIA VKKCRFLAYQ KRVDQITQRL ESGTLEVETN 101: RTDLEFEKRE AIGEILELNP RYKAPPDYKP LLKEARLPID VKEHSDFSFL SLIFGSQGDT QKRLEKETGA KVQIFGTKTG GEKVELSPSD ENEIQKSWQE 201: LYFQISSDTY EKVDAAIAVV ELLMSSVSGN TGAGAAPPSS ISEIISTIPG NSIATATAPT SERTTDHSQV LQHGSSFHLS SNQAPLHPPL EHFVSGLGYN 301: IQEQELPKNS MNLNPLFAQQ LLPVPHDTSL PPGSHVPRPP DSFPFSLSNT PRTYSVTLPP YSGSQIQPIG PRSTVRPSTL FTFHPVHRPT LLPDIDQSVR 401: PLAPNFSPHP VAHQPGTEIP SIPFPSASSL IAEYGSGSSL RPMSVSPHIA SRPAGLVPAY PPTNTASRPF HGDFGYIPQQ SNIITTPHIS PRPNSQSAHL 501: PHLPFQASQH FGQNFTRSQH FDRQMDQPLS HPSAPFHGNA RSNVGPPLSQ MMPRNFPGAQ FPQHSAHFPP RPVFHHDNLI PRGQPQIRQR FNSGVHQVYD 601: PFSPSDG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)