AT3G48770.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.923 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DNA binding;ATP binding | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DNA binding;ATP binding; FUNCTIONS IN: DNA binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, BED-type predicted (InterPro:IPR003656), ATPase-like, ATP-binding domain (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28020.1); Has 779 Blast hits to 661 proteins in 171 species: Archae - 6; Bacteria - 159; Metazoa - 152; Fungi - 67; Plants - 310; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:18079261..18086817 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 215815.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.41 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||
| Length | 1899 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MEKAFSPNTS NIKQEKSSNR SSHHKQDLAW NYVREAIDSR RRKVITCGFC GKQYVGSEIN RMKHHLAGLN NRSACQKVSS EVQHSMRKSL EENKEKPKKI 0101: IVVDLDMQDD EVNVGQSSHQ SCSSSSRKRK VQHSMRKSLE ETEEKLKQII VVDLDMQDNE VNVGQSSLQS FSSSNRKRKR ETKTKPVIIE TMTESAKQHI 0201: ERIRRTKFSI GGAENPLTED LHQAVKNLSA ELYAKDVHFL MELIQNAEDN EYPEGVDPSL EFVITSEDIT NTGAPATLLI FNNEKGFSEK NIESICSVGR 0301: STKKGNRKCG YIGEKGIGFK SVFLITSQPY IFSNGYQIRF NEAPCSHCSL GYIVPEWVDQ HPSLVDIQRM YGSGSALPTT TIILPLKSDK VKPVKEQLSN 0401: VHPEVLLFLS KIKRLSIREH CLDPKLSTVN SIGIVSETNF VTRKSIDAES YTIHLSASEK GKNSEQECSY YMWRQKFPVK HENRVDRRSE VEEWVITLAF 0501: PFGERLGHGN NSPGIYAFLP TEMVTNFPFI IQADFILASS REMILLDDIW NQGILNCVPL AFLNAFTSLV KTTDAPVSSL LPAFRFLPVK ESNYAKLNVV 0601: RESIRARVCA EEIVPSISHQ GQKFFYKPCE VGRLIPTFWD ILEKAGSEGA SLQNISSHGI YILNSAFDRT EYDNVLNFLG LKQVSNEWYV KCIQGCDLVT 0701: SVSEATYVEV LLFIAENWQC RFQNTNMGKV PLIKYVVQKG VSSLSSLGGF SPRTLCLSTE KNQAWLLDWN DEFRCMSNFV FMPPTTRTAL KVCSKKEIIH 0801: TWLKENVKVI TLSVSDYAKH LRENLNGDKR LVVAYAHFLH HSISKDFLSK EEAGKCCKDM PLVDNYGNVN ISRNGVLVPA SAGKWVSLVG SNPWRHSGYI 0901: ELSEEYLLSN RFAGLRSNKK DLLGFLKSSV EAGDIPDIEP PNVAIPALSG PLTKENVLLL LEWINKCNRH SLRSNFLNSV RGGSWLRTTM NGVSDYRPPS 1001: QSFYHTSSWG SILQNGSILV DIPLVDRSYY GNEIEKYKEE LKIAGVMFEF SEVCRFVGNH LMSLAETSTQ SSANVFSILK FIRYLREKRL SPADFITAVK 1101: NGPWLKTISG YRSPDGAVLF SEEWKAASLI SDIPFIDRGF YGVVSLNGYK EELELLGVVV KFPDNYSLIV SHLNTAKLTY LTPDAMFLVL DCMRQLSPHR 1201: LINALWNSSQ CFKTKKNGYK SPAECFIPDP EWTCLLSVFD CFPLIDDDFY GSRIFAYKGE LKQIGVKLQL EEAVKMFVST FKQKAISSGL TRCTASSLLS 1301: CYKKLMGSLY KYPEELMKSF KQFQWLHTKL GDFRAPKDCI LFDSEWEPLR LIANLPFIDD GPNWYGKSIH EFRKELESLG VTVELRKGMS HVISSLSLPD 1401: PSRIAPSSAL SLFRCIKFLR EDRFQQLPKE LLDKVSVKWL KTHAGYRSPE ECLLFDRTWK LEPCDGPFID EEYYGSDINS FREELIAIGV GHDSDKACQL 1501: LARNVYKLSE TDAISRVYRF LSEAEWKPEK GASSGRIWIP SDEKWADISS CVLFDKDKLF GSKFNVLENH YCSGKDHNLL GFFSSAFGVR INPSIEDYCE 1601: LWKYWEKTKN RLSSHECCAF WSFVVRHGDT VKAEKLLSES FSRLPVHSPD CNNNDGVMLS SISDVFIADD LLLKDMFIDS PVFVWYPTPS IPTLSRTRLI 1701: EIYRNIGVKE VSKCVEIAEA DLTGFKTELQ EVVDPKKNLI GPGLVKLILA FLSDPSLKVE TAERLRIIHS LVDIDVKETS ETITTEYTLS LPSKGEKLIA 1801: KAKRMIRWER EKGVVYAEKM EKTCGKRKLL EYATCFAEVI AKGVMWERED LIGRLSELVK MAYLVEFDEE ALEFLMKSKN LQVYEEDEKL ISDEFSQVN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)