AT3G28770.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF1216) | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF1216); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower, epidermis; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1216 (InterPro:IPR009605); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1216) (TAIR:AT3G28810.1); Has 852843 Blast hits to 124903 proteins in 3296 species: Archae - 3984; Bacteria - 158225; Metazoa - 281358; Fungi - 79908; Plants - 38733; Viruses - 3887; Other Eukaryotes - 286748 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:10796716..10803237 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 232864.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 4.73 | ||||||||||||||||||||||||
| GRAVY (calculated) | -1.66 | ||||||||||||||||||||||||
| Length | 2081 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MRKVYLFFVC CIVATSLTLN VVLAHETVVN PPNTIKDIEP YISDRALGFV LKLENNCPIR EQLRSFFEKL KDLLKLESSV TPLIEDNEPK TFKFDLKSKS 0101: ENLLQTMFML GRGLLSSSIR KEMFEVMKSL TELHAAIGRV IIEKHIKGDE AMSLSLEQKN AVETSITQWE QTITRIVKIV VEVKSKSSSE ASSEESSSTE 0201: HNNVTTGSNM VETNGENSES TQEKGDGVEG SNGGDVSMEN LQGNKVEDLK EGNNVVENGE TKENNGENVE SNNEKEVEGQ GESIGDSAIE KNLESKEDVK 0301: SEVEAAKNDG SSMTENLGEA QGNNGVSTID NEKEVEGQGE SIEDSDIEKN LESKEDVKSE VEAAKNAGSS MTGKLEEAQR NNGVSTNETM NSENKGSGES 0401: TNDKMVNATT NDEDHKKENK EETHENNGES VKGENLENKA GNEESMKGEN LENKVGNEEL KGNASVEAKT NNESSKEEKR EESQRSNEVY MNKETTKGEN 0501: VNIQGESIGD STKDNSLENK EDVKPKVDAN ESDGNSTKER HQEAQVNNGV STEDKNLDNI GADEQKKNDK SVEVTTNDGD HTKEKREETQ GNNGESVKNE 0601: NLENKEDKKE LKDDESVGAK TNNETSLEEK REQTQKGHDN SINSKIVDNK GGNADSNKEK EVHVGDSTND NNMESKEDTK SEVEVKKNDG SSEKGEEGKE 0701: NNKDSMEDKK LENKESQTDS KDDKSVDDKQ EEAQIYGGES KDDKSVEAKG KKKESKENKK TKTNENRVRN KEENVQGNKK ESEKVEKGEK KESKDAKSVE 0801: TKDNKKLSST ENRDEAKERS GEDNKEDKEE SKDYQSVEAK EKNENGGVDT NVGNKEDSKD LKDDRSVEVK ANKEESMKKK REEVQRNDKS STKEVRDFAN 0901: NMDIDVQKGS GESVKYKKDE KKEGNKEENK DTINTSSKQK GKDKKKKKKE SKNSNMKKKE EDKKEYVNNE LKKQEDNKKE TTKSENSKLK EENKDNKEKK 1001: ESEDSASKNR EKKEYEEKKS KTKEEAKKEK KKSQDKKREE KDSEERKSKK EKEESRDLKA KKKEEETKEK KESENHKSKK KEDKKEHEDN KSMKKEEDKK 1101: EKKKHEESKS RKKEEDKKDM EKLEDQNSNK KKEDKNEKKK SQHVKLVKKE SDKKEKKENE EKSETKEIES SKSQKNEVDK KEKKSSKDQQ KKKEKEMKES 1201: EEKKLKKNEE DRKKQTSVEE NKKQKETKKE KNKPKDDKKN TTKQSGGKKE SMESESKEAE NQQKSQATTQ ADSDESKNEI LMQADSQADS HSDSQADSDE 1301: SKNEILMQAD SQATTQRNNE EDRKKQTSVA ENKKQKETKE EKNKPKDDKK NTTKQSGGKK ESMESESKEA ENQQKSQATT QADSDESKNE ILMQADSQAD 1401: SHSDSQADSD ESKNEILMQA DSQATTQRNN EEDRKKQTSV AENKKQKETK EEKNKPKDDK KNTTEQSGGK KESMESESKE AENQQKSQAT TQGESDESKN 1501: EILMQADSQA DTHANSQGDS DESKNEILMQ ADSQADSQTD SDESKNEILM QADSQADSQT DSDESKNEIL MQADSQAKIG ESLEDNKVKG KEDNGDEVGK 1601: ENSKTIEVKG RHEESKDGKT NENGGKEVST EEGSKDSNIV ERNGGKEDSI KEGSEDGKTV EINGGEELST EEGSKDGKIE EGKEGKENST KEGSKDDKIE 1701: EGMEGKENST KESSKDGKIN EIHGDKEATM EEGSKDGGTN STGKDSKDSK SVEINGVKDD SLKDDSKNGD INEINNGKED SVKDNVTEIQ GNDNSLTNST 1801: SSEPNGDKLD TNKDSMKNNT MEAQGGSNGD STNGETEETK ESNVSMNNQN MQDVGSNENS MNNQTTGTGD DIISTTTDTE SNTSKEVTSF ISNLEEKSPG 1901: TQEFQSFFQK LKDYMKYLCP VSSTFEAKDS RSYMSEMISM ATKLSDAMAV LQAKKSGSGQ MKTTLQGYQQ EVMKTLTILQ SVMGKAVTEQ QSKDSGSLTL 2001: TLSQQQAIKE IVLKWEQVMS QFVKIATESE KQFSLEISTE NGYHMKKSYN SSSSSSSSSS SSSRSDLKLN GEHLKGMGMN G |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)