AT3G28840.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
|
||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||
| Description (TAIR10) | protein_coding : Protein of unknown function (DUF1216) | ||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||
| Computational Description (TAIR10) |
Protein of unknown function (DUF1216); LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1216 (InterPro:IPR009605); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1216) (TAIR:AT3G28780.1); Has 206629 Blast hits to 66457 proteins in 3054 species: Archae - 425; Bacteria - 97961; Metazoa - 34248; Fungi - 11436; Plants - 13647; Viruses - 2653; Other Eukaryotes - 46259 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:10838469..10839734 | ||||||||||||||||||||
| Molecular Weight (calculated) | 36877.70 Da | ||||||||||||||||||||
| IEP (calculated) | 10.06 | ||||||||||||||||||||
| GRAVY (calculated) | -0.01 | ||||||||||||||||||||
| Length | 391 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAKLSLALGL LLLLALSEVY EVQGSFLLRH YMRKFPRRSR DFRPFACRGM LKFVDVLELK CPLKPQYKSF FGNLRSYMNF INSASGSKNF DAELKGKAQG 101: LFSAMSAMSG KGAASADSSK VMDTLLSMGK TLGTQQQSGS SVMSLGQRKE MIMSMAKWAQ TIGQFVVSAA AKSGNKIDIS SLGIDGIDAS AAGAGDSTAS 201: GGVSATGTGS YGAGAGGSSA SGSDTAAGGT TATGGTTAAG GSTAAGGTTA SGAGTAGYGA TAGGATASGA GTAAGGTTAS DAGTAAGTTA SGAGTAAGGT 301: TAAGAGAAAG AGAAAGAGAA AGGTTAAGGV SGSYGSSGGS ASNTNGGTSS CGTSACSNGG GASFKGAMNF QGKASSQSQQ AASSQTSNGS S |
||||||||||||||||||||
| See Also |
|
||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)