AT3G22690.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881), Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1); Has 49784 Blast hits to 14716 proteins in 280 species: Archae - 2; Bacteria - 10; Metazoa - 107; Fungi - 167; Plants - 48594; Viruses - 0; Other Eukaryotes - 904 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:8021347..8024534 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 104225.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.07 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.11 | ||||||||||||||||||||||||||||||||||||||||
| Length | 938 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAMLGNVLHL SPMVLATTTT TKPSLLNQSK CTKATPSSLK NCKTIDELKM FHRSLTKQGL DNDVSTITKL VARSCELGTR ESLSFAKEVF ENSESYGTCF 101: MYNSLIRGYA SSGLCNEAIL LFLRMMNSGI SPDKYTFPFG LSACAKSRAK GNGIQIHGLI VKMGYAKDLF VQNSLVHFYA ECGELDSARK VFDEMSERNV 201: VSWTSMICGY ARRDFAKDAV DLFFRMVRDE EVTPNSVTMV CVISACAKLE DLETGEKVYA FIRNSGIEVN DLMVSALVDM YMKCNAIDVA KRLFDEYGAS 301: NLDLCNAMAS NYVRQGLTRE ALGVFNLMMD SGVRPDRISM LSAISSCSQL RNILWGKSCH GYVLRNGFES WDNICNALID MYMKCHRQDT AFRIFDRMSN 401: KTVVTWNSIV AGYVENGEVD AAWETFETMP EKNIVSWNTI ISGLVQGSLF EEAIEVFCSM QSQEGVNADG VTMMSIASAC GHLGALDLAK WIYYYIEKNG 501: IQLDVRLGTT LVDMFSRCGD PESAMSIFNS LTNRDVSAWT AAIGAMAMAG NAERAIELFD DMIEQGLKPD GVAFVGALTA CSHGGLVQQG KEIFYSMLKL 601: HGVSPEDVHY GCMVDLLGRA GLLEEAVQLI EDMPMEPNDV IWNSLLAACR VQGNVEMAAY AAEKIQVLAP ERTGSYVLLS NVYASAGRWN DMAKVRLSMK 701: EKGLRKPPGT SSIQIRGKTH EFTSGDESHP EMPNIEAMLD EVSQRASHLG HVPDLSNVLM DVDEKEKIFM LSRHSEKLAM AYGLISSNKG TTIRIVKNLR 801: VCSDCHSFAK FASKVYNREI ILRDNNRFHY IRQGKCSCGD FCLTDDDLEV LKGCLDLGFG FNYDEIPALC KTLPALELCY SMSQKNLDDK HTPSLQLPIG 901: RSLVPSCDNP DDVKARLKCW AQARRRRFQK GIGRSEFN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)