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AT3G21820.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : histone-lysine N-methyltransferase ATXR2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
histone-lysine N-methyltransferase ATXR2 (ATXR2); FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893), SET domain (InterPro:IPR001214); BEST Arabidopsis thaliana protein match is: SET domain group 37 (TAIR:AT2G17900.1); Has 1293 Blast hits to 1280 proteins in 202 species: Archae - 0; Bacteria - 4; Metazoa - 376; Fungi - 353; Plants - 295; Viruses - 0; Other Eukaryotes - 265 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G21820-MONOMEREC:2.1.1.43eggNOG:COG2940eggNOG:KOG2084
EMBL:AB025634EMBL:AK221711EMBL:BT020260EMBL:BT021112
EMBL:CP002686EnsemblPlants:AT3G21820EnsemblPlants:AT3G21820.1entrez:821736
GeneID:821736GO:GO:0005634GO:GO:0018024GO:GO:0046872
Gramene:AT3G21820.1hmmpanther:PTHR12197hmmpanther:PTHR12197:SF75HOGENOM:HOG000012386
InParanoid:Q5PP37InterPro:IPR001214InterPro:IPR002893iPTMnet:Q5PP37
KEGG:ath:AT3G21820OMA:IEFQIGRPaxDb:Q5PP37Pfam:PF00856
Pfam:PF01753Pfam:Q5PP37Pfscan:PS50280PhylomeDB:Q5PP37
PRIDE:Q5PP37PRO:PR:Q5PP37PROSITE:PS50280ProteinModelPortal:Q5PP37
Proteomes:UP000006548RefSeq:NP_188819.2SMART:SM00317SMR:Q5PP37
STRING:3702.AT3G21820.1SUPFAM:SSF144232SUPFAM:SSF82199TAIR:AT3G21820
tair10-symbols:ATXR2tair10-symbols:SDG36UniGene:At.43333UniGene:At.5858
UniProt:Q5PP37
Coordinates (TAIR10) chr3:-:7688629..7691444
Molecular Weight (calculated) 52805.20 Da
IEP (calculated) 4.35
GRAVY (calculated) -0.31
Length 473 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSVYKTDEN FAADVAALLA PLPTPQLQEY FNKLITSRRC NGIEVKNNGT IGKGVYANSE FDEDELILKD EILVGIQHSS NKVDCLVCSF CFRFIGSIEK
101: QIGRKLYFKN LGVSGCCDDD SSEEDECVKY NGNEEQCGGS SSSHNTLPEG VVSSLMNGEM ALPHTDKFPL PSPLSCPGGC QEAFYCSESC AAADWESSHS
201: LLCTGERSES ISREALGEFI KHANDTNDIF LLAAKAIAFT ILRYRKLKAE HVDKKAKQSE PKQSLLLEAW KPVSIGYKRR WWDCIALPDD VDPTDEGAFR
301: MQIKNLACTS LELLKIAIFD KECEALFSLE IYGNIIGMFE LNNLDLVVAS PVEDYFLYID DLPDAEKEET EEITRPFLDA LGDEYSDCCQ GTAFFPLQSC
401: MNHSCCPNAK AFKREEDRDG QAVIIALRRI SKNEEVTISY IDEELPYKER QALLADYGFS CKCSKCLEDS SSI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)