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AT3G20910.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : nuclear factor Y, subunit A9
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nuclear factor Y, subunit A9 (NF-YA9); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, specific transcriptional repressor activity; INVOLVED IN: negative regulation of gene-specific transcription, regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex, nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit A1 (TAIR:AT5G12840.4); Has 696 Blast hits to 696 proteins in 160 species: Archae - 0; Bacteria - 0; Metazoa - 146; Fungi - 142; Plants - 380; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).
Protein Annotations
BioGrid:6972eggNOG:COG5224eggNOG:KOG1561EMBL:AF412056
EMBL:AP001304EMBL:AY087696EMBL:AY093971EMBL:CP002686
EnsemblPlants:AT3G20910EnsemblPlants:AT3G20910.1entrez:821640GeneID:821640
Genevisible:Q945M9GO:GO:0003677GO:GO:0003700GO:GO:0006351
GO:GO:0009555GO:GO:0009793GO:GO:0010262GO:GO:0016602
GO:GO:0045892GO:GO:0048316GO:GO:0055046Gramene:AT3G20910.1
hmmpanther:PTHR12632hmmpanther:PTHR12632:SF14HOGENOM:HOG000239782InParanoid:Q945M9
InterPro:IPR001289InterPro:IPR018362KEGG:ath:AT3G20910KO:K08064
OMA:GWASSNPPANTHER:PTHR12632PaxDb:Q945M9Pfam:PF02045
Pfam:Q945M9Pfscan:PS51152PhylomeDB:Q945M9PRINTS:PR00616
PRO:PR:Q945M9PROSITE:PS00686PROSITE:PS51152ProteinModelPortal:Q945M9
Proteomes:UP000006548Reactome:R-ATH-2426168RefSeq:NP_566670.1scanprosite:PS00686
SMART:SM00521SMR:Q945M9STRING:3702.AT3G20910.1TAIR:AT3G20910
tair10-symbols:NF-YA9UniGene:At.26408UniGene:At.6206UniProt:Q945M9
Coordinates (TAIR10) chr3:+:7326495..7328369
Molecular Weight (calculated) 33153.20 Da
IEP (calculated) 9.80
GRAVY (calculated) -1.08
Length 303 amino acids
Sequence (TAIR10)
(BLAST)
001: MGIEDMHSKS DSGGNKVDSE VHGTVSSSIN SLNPWHRAAA ACNANSSVEA GDKSSKSIAL ALESNGSKSP SNRDNTVNKE SQVTTSPQSA GDYSDKNQES
101: LHHGITQPPP HPQLVGHTVG WASSNPYQDP YYAGVMGAYG HHPLGFVPYG GMPHSRMPLP PEMAQEPVFV NAKQYQAILR RRQARAKAEL EKKLIKSRKP
201: YLHESRHQHA MRRPRGTGGR FAKKTNTEAS KRKAEEKSNG HVTQSPSSSN SDQGEAWNGD YRTPQGDEMQ SSAYKRREEG ECSGQQWNSL SSNHPSQARL
301: AIK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)