AT5G66100.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : winged-helix DNA-binding transcription factor family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
winged-helix DNA-binding transcription factor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT4G35890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:26427639..26429772 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49070.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.68 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.77 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 453 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMATTASSAA NSASRFSIDS SISRSRHGDS SPWLLPSDSH DHPTLSLSQD DPFSAPSVSP PTGNNSSDYD NADKKPPPVW NMPSSNSSSD VGPVMGAAES 101: WPALSLSARS SSIKSPSLDA SKPFPDGSSS SIPPPQATSN TSTNANAGSS VSATSSENSA VNNSQRKPFR RNNNTSSSST SSNVSNAAPL NTRDQNHSQR 201: GGGSFGSGNF RNSQRNRNSS SYPRGEGLHH GNRRNYEHGN QSGFSHRNYS GRDMHLQPQR GVGMIRPQML MGPPSFPASS AQYMAAPQLG SYGGPIIYPD 301: YAQHVFMPHP SPDPMGLVGP FPLQPMYFRN FDAILYNKIL TQVEYYFSAD NLSRDEHLRD QMNDEGWVPV RVIAAFRRLA ELTNNIQTIL EALRSSEVVE 401: IQGETLRRRG DWDKYLLPRE PSRSGPAAGA SNNASLVSQI ESMTLSERSR EGV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)