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AT3G19330.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.966
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF677)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF677); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: shoot apex, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF677) (TAIR:AT3G19250.1); Has 131 Blast hits to 131 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 131; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IH07eggNOG:ENOG410YD5MEMBL:AB025624EMBL:BT032878
EMBL:CP002686EnsemblPlants:AT3G19330EnsemblPlants:AT3G19330.1entrez:821467
GeneID:821467Genevisible:Q9LT84GO:GO:0005886GO:GO:0016021
hmmpanther:PTHR31113hmmpanther:PTHR31113:SF5HOGENOM:HOG000071037InParanoid:Q9LT84
InterPro:IPR007749iPTMnet:Q9LT84KEGG:ath:AT3G19330OMA:CCPLAAS
PaxDb:Q9LT84Pfam:PF05055Pfam:Q9LT84PhylomeDB:Q9LT84
PRIDE:Q9LT84PRO:PR:Q9LT84Proteomes:UP000006548RefSeq:NP_188564.2
RefSeq:NP_974339.1RefSeq:NP_974340.1TAIR:AT3G19330TMHMM:TMhelix
UniGene:At.43813UniGene:At.50201UniProt:Q9LT84
Coordinates (TAIR10) chr3:+:6699423..6700772
Molecular Weight (calculated) 43011.80 Da
IEP (calculated) 7.87
GRAVY (calculated) -0.09
Length 382 amino acids
Sequence (TAIR10)
(BLAST)
001: MRNCLSFNPA SPEASLGDDP LPHPSLESGV ASTSRNDASI SSPTFNLSRE LAHAFQTPSY HDVRSRVHVV VDLTQIHHRL IQPDIELLLS QVLQPNKECV
101: QEAIRHVKQT TLTNLVSTYF QHSEDATRLC LNLYQNVHSA RHHLYTPLLD LFNIFPGDSL PAIDESLCDL AFDVFLKLDT FENPFSSPES YSFRDTQLCF
201: SQLKHNLDRR LRKSRSRVRL IHHATAGSSL CLVAAVVAVA ASAVVIASHA LPILLVVAGP LCSPYLPHSF KRKELTNICQ LNAASKGTFV LNKDLDTIDR
301: LVSRLHTGIE YDKFLIRLGL ERGRDVHSIQ EILKLLRKSH LPLTHQLKDL EDHICLWFTN VNKARSLLLT EIHLPRPSHV IL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)