AT3G13900.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; INVOLVED IN: ATP biosynthetic process, phospholipid transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, phospholipid-translocating, flippase (InterPro:IPR006539), ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (TAIR:AT1G54280.1); Has 2989 Blast hits to 2738 proteins in 536 species: Archae - 31; Bacteria - 1088; Metazoa - 612; Fungi - 467; Plants - 304; Viruses - 0; Other Eukaryotes - 487 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:4586151..4590681 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 140309.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.35 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.07 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1243 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MGRRRIRSRI RKSHFYTFKC LRPKTLEDQG PHIINGPGYT RIVHCNQPHL HLAKVLRYTS NYVSTTRYNL ITFLPKCLYE QFHRVANFYF LVAAILSVFP 0101: LSPFNKWSMI APLIFVVGLS MGKEALEDWR RFMQDVKVNS RKATVHRGDG DFGRRKWKKL RVGDVVKVEK DQFFPADLLL LSSSYEDGIC YVETMNLDGE 0201: TNLKVKRCLD VTLPLERDDT FQSFSGTIKC EDPNPNLYTF VGNLEYDGQV YPLDPSQILL RDSKLRNTSY VYGVVVFTGH DTKVMQNSTK SPSKRSRIEK 0301: RMDYIIYTLF ALLVLVSFIS SLGFAVMTKM HMGDWWYLRP DKPERLTNPR NPFHAWVVHL ITAVLLYGYL IPISLYVSIE LVKVLQATFI NQDLQMYDSE 0401: SGTPAQARTS NLNEELGQVD TILSDKTGTL TCNQMDFLKC SIAGTSYGVR ASEVELAAAK QMAIDLDEEQ GEEVTHLPRT RGRMHGYAKM PSKTSSDIEL 0501: ETVITATDEG DQTQSTGIKG FSFEDQRLMG GNWLNEPNSD DILMFLRILA VCHTAIPEVD EDTGKCTYEA ESPDEVAFLV AAGEFGFEFT KRTQSSVFIS 0601: ERHSGQPVER EYKVLNVLDF TSKRKRMSVI VRDEKGQILL LCKGADSIIF ERLSKNGKNY LEATSKHLNG YGEAGLRTLA LSYRKLDETE YSIWNSEFHK 0701: AKTSVGADRD EMLEKVSDMM EKELILVGAT AVEDKLQKGV PQCIDKLAQA GLKIWVLTGD KMETAINIGY ACSLLRQGMK QIYIALRNEE GSSQDPEAAA 0801: RENILMQIIN ASQMIKLEKD PHAAFALIID GKTLTYALED DIKYQFLALA VDCASVICCR VSPKQKALVT RLAKEGTGKT TLAIGDGAND VGMIQEADIG 0901: VGISGVEGMQ AVMASDFSIA QFRFLERLLV VHGHWCYKRI AQMICYFFYK NITFGLTLFY FEAFTGFSGQ AIYNDSYLLL FNVILTSLPV IALGVFEQDV 1001: SSEVCLQFPA LYQQGPKNLF FDWYRIIGWM ANGVYASVVI FSLNIGIFHV QSFCSGGQTA DMDAMGTAMF TCIIWAVNVQ IALTMSHFTW IQHVLIWGSI 1101: VTWYIFLALF GMLPPKVSGN IFHMLSETLA PAPIFWLTSL LVIAATTLPY LAYISFQRSL NPLDHHIIQE IKHFRIDVQD ECMWTRERSK AREKTKIGVT 1201: ARVDAKIRQL RGRLQRKHSI LSVMSGLSGV SASTDTTSTT QHS |
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)