AT4G28380.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 ASURE: extracellular What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Leucine-rich repeat (LRR) family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Leucine-rich repeat (LRR) family protein; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: inflorescence meristem; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT3G19020.1); Has 56971 Blast hits to 17893 proteins in 671 species: Archae - 10; Bacteria - 1073; Metazoa - 6575; Fungi - 300; Plants - 46284; Viruses - 0; Other Eukaryotes - 2729 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:14039756..14040931 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 42703.40 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.03 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.12 | ||||||||||||||||||||||||||||||||
| Length | 391 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MALSITFPVL ISVLLYHFSL VSTAKHSLHH HTSHSTNPKQ HLQQAYRALK AWKKVIYSDP KNLTADWVGP SVCSYTGIFC APSPSNPNTL VVAGIDLNHG 101: DIAGFLPEAI GLLSDLALIH LNSNRFCGIL PRSFANLSLL YELDLSNNRF VGPFPDVVLA LPSLKYLDLR YNEFEGPLPP KLFSNPLDAI FVNNNRLTSL 201: IPRDFTGTTA SVVVFANNDF SGCLPPTIAR FADTLEELLL INSSLSGCLP PEVGYLYKLR VLDMSYNSLV GPVPYSLAGL GHLEQLNLEH NMFTGTVPLG 301: VCVLPSLLNV TVSYNYFSEE EGICRNLTSR GIAIDDRYNC LPDKPLQRPQ KVCDAVLEHP IDCYDHECSP MAPLVAPSTA GPSIAPGPAD T |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)