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AT3G07060.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NHL domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo defective 1974 (emb1974); CONTAINS InterPro DOMAIN/s: Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: haloacid dehalogenase-like hydrolase family protein (TAIR:AT1G56500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKTXeggNOG:ENOG410ZJT9EMBL:CP002686EnsemblPlants:AT3G07060
EnsemblPlants:AT3G07060.1entrez:819892Gene3D:2.120.10.30GeneID:819892
Gramene:AT3G07060.1hmmpanther:PTHR24104hmmpanther:PTHR24104:SF10InParanoid:F4JD91
InterPro:IPR011042KEGG:ath:AT3G07060OMA:CISVDEDPaxDb:F4JD91
PRIDE:F4JD91ProteinModelPortal:F4JD91Proteomes:UP000006548RefSeq:NP_187362.3
STRING:3702.AT3G07060.1SUPFAM:SSF63825TAIR:AT3G07060tair10-symbols:emb1974
UniGene:At.53210UniProt:F4JD91
Coordinates (TAIR10) chr3:+:2232760..2236913
Molecular Weight (calculated) 87030.50 Da
IEP (calculated) 5.17
GRAVY (calculated) -0.28
Length 774 amino acids
Sequence (TAIR10)
(BLAST)
001: MSNRSLHLKK ISWLSSRILS DNVHGRFRRS ITTPATCLAP SLDGDMNIGS KTLVEQRFSR GFASVRRVSR ASSSSSSSPS SPHVDLLSFI KASLDKLEGP
101: SHHWLNRDFG NKQLFKDKGT YVVLAGHLLD GTSDLSGFFE KLKLLQQRSP GVCFMGIHFS DQARIADDRT ALAELILKEY LTFPVLLSEK EFPKTSGEVR
201: YIVFKDFKNP LIYEEKDLDI ASVVKALDSL LTQDTEKSKS VRLFTNTWSK QAEAIKESHF PSFFQDLLLY FPGCISADEV GDRLFLSDTN HHRIIIFENS
301: GKIVDSIGCF PGFEDGDFES AKMLRPTGTL YDEAEDCLYI VDSENHAIRR ANINSRVLET VYPKVIKKTG GLWSWIMEKM GLGKDDDTTV DADTKSEEFD
401: ARSLLFPWHI LKRDDESLLV INKSFSKLWI INFASGEIEE VVEGFSKIIE ICGQSITEKL SVLEHMPSNW LQQQTAAIAS FKEQPSASLL SSFTKLGDDI
501: VMTDIACQRV LKLNRDSGAC SSIQFSNSGI LGLPYWLFIP LERVFNLANG VQEAHLSHTQ ELRLLPGKIS IRLNIEIPPC TELVEPIQES CIWRQTRGAI
601: SEFSSAGSAV EPSEKIGVSQ QWYDELDSLA KEIANPEAAE EEEEEDVNPS EVDREEDGRI HIDCPVKTSP GSSELIVYAA LYLRLARNEE TESATQEELA
701: RKIAKILKPV RNITTMKEDL FVNLLSKSKR ELRDIVFIKP MHVRIRLDSK DHPKADNSRD VILTDSSVEV DVSL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)