AT3G04630.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : WVD2-like 1 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Member of a small gene family which have a KLEEK domain which may be involved in protein- protein interactions. Over expression of WDL1 results in abnormal root development. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
WVD2-like 1 (WDL1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: circumnutation, root morphogenesis; LOCATED IN: cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Xklp2 targeting protein (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: TPX2 (targeting protein for Xklp2) protein family (TAIR:AT5G28646.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:1259231..1260652 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 31951.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.10 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.13 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 286 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGREVVEVLM DRNADVSSAR VHVAPKIAAE ETDEEFEVKE CTEEKSLSEN APNVGSAERV GAQKSPKTRN GNAKVSKQDA PLLAVRKPLQ PENKKHIDDE 101: DNCSIASSVA TSMRMGKSGL TYGSAPTFRS AQRAEKRKEY YQKLEEKNQA LEAERNELEQ RQKDEQEAAL KQLRKNLKFK AKPVPNFYYE APPAKPELKK 201: LPLTRPKSPK LILSRRKSFS DAVSSSSREE ILKTVSNRNR HSTGTVQNKD DDHRNKNTNA AHDSPRVRSG KGKSGLKPVN ESSEEA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)