AT3G04220.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) (TAIR:AT5G11250.1); Has 57565 Blast hits to 26212 proteins in 923 species: Archae - 48; Bacteria - 2396; Metazoa - 5228; Fungi - 257; Plants - 46915; Viruses - 16; Other Eukaryotes - 2705 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:1109118..1112188 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 98516.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.56 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 867 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDSSFLLETV AAATGFFTLL GTILFMVYRK FKDHRENKEN DSSSSTQPSP SPPLSSLSLT RKYDVFPSFR GEDVRKDFLS HIQKEFQRQG ITPFVDNNIK 101: RGESIGPELI RAIRGSKIAI ILLSKNYASS SWCLDELVEI IKCKEEMGQT VIVIFYKVDP SLVKKLTGDF GKVFRNTCKG KERENIERWR EAFKKVATIA 201: GYDSRKWDNE SGMIEKIVSD ISEMLNHSTP SRDFDDLIGM GDHMEKMKPL LDIDSDEMKT IGIWGPPGVG KTTIARSLYN QHSDKFQLSV FMESIKTAYT 301: IPACSDDYYE KLQLQQRFLS QITNQENVQI PHLGVAQERL NDKKVLVVID DVNQSVQVDA LAKENDWLGP GSRIIITTQD RGILRAHGIE HIYEVDYPNY 401: EEALQIFCMH AFGQKSPYDG FEELAQQVTT LSGRLPLGLK VMGSYFRGMT KQEWTMALPR VRTHLDGKIE SILKLSYDAL CDVDKSLFLH LACSFHNDDT 501: ELVEQQLGKK FSDLRQGLHV LAEKSLIHMD LRLIRMHVLL AQLGREIVRK QSIHEPGQRQ FLVDATDIRE VLTDDTGSRS VIGIDFDFNT MEKELDISEK 601: AFRGMSNLQF IRIYGDLFSR HGVYYFGGRG HRVSLDYDSK LHFPRGLDYL PGKLSKLEKL WEGIQPLRNL EWLDLTCSRN LKELPDLSTA TNLQRLSIER 701: CSSLVKLPSS IGEATNLKKI NLRECLSLVE LPSSFGNLTN LQELDLRECS SLVELPTSFG NLANVESLEF YECSSLVKLP STFGNLTNLR VLGLRECSSM 801: VELPSSFGNL TNLQVLNLRK CSTLVELPSS FVNLTNLENL DLRDCSSLLP SSFGNVTYLK RLKFYKC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)