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AT3G03580.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G18750.1); Has 54534 Blast hits to 14239 proteins in 270 species: Archae - 2; Bacteria - 13; Metazoa - 57; Fungi - 143; Plants - 53473; Viruses - 0; Other Eukaryotes - 846 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC009327EMBL:BT004278
EMBL:BT006153EMBL:CP002686EnsemblPlants:AT3G03580EnsemblPlants:AT3G03580.1
entrez:821229Gene3D:1.25.40.10GeneID:821229Genevisible:Q9SS60
GO:GO:0008270Gramene:AT3G03580.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF567
HOGENOM:HOG000237570InParanoid:Q9SS60InterPro:IPR002885InterPro:IPR011990
InterPro:IPR032867KEGG:ath:AT3G03580OMA:CGHLRDLPaxDb:Q9SS60
Pfam:PF01535Pfam:PF13041Pfam:PF13812Pfam:PF14432
Pfam:Q9SS60Pfscan:PS51375PhylomeDB:Q9SS60PRIDE:Q9SS60
PRO:PR:Q9SS60PROSITE:PS51375ProteinModelPortal:Q9SS60Proteomes:UP000006548
RefSeq:NP_187008.1SMR:Q9SS60STRING:3702.AT3G03580.1SUPFAM:SSF48452
TAIR:AT3G03580TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.40958
UniProt:Q9SS60
Coordinates (TAIR10) chr3:-:860695..863343
Molecular Weight (calculated) 99027.90 Da
IEP (calculated) 6.65
GRAVY (calculated) -0.04
Length 882 amino acids
Sequence (TAIR10)
(BLAST)
001: MQTRVSSPFI SRALSSSSNL NELRRIHALV ISLGLDSSDF FSGKLIDKYS HFREPASSLS VFRRVSPAKN VYLWNSIIRA FSKNGLFPEA LEFYGKLRES
101: KVSPDKYTFP SVIKACAGLF DAEMGDLVYE QILDMGFESD LFVGNALVDM YSRMGLLTRA RQVFDEMPVR DLVSWNSLIS GYSSHGYYEE ALEIYHELKN
201: SWIVPDSFTV SSVLPAFGNL LVVKQGQGLH GFALKSGVNS VVVVNNGLVA MYLKFRRPTD ARRVFDEMDV RDSVSYNTMI CGYLKLEMVE ESVRMFLENL
301: DQFKPDLLTV SSVLRACGHL RDLSLAKYIY NYMLKAGFVL ESTVRNILID VYAKCGDMIT ARDVFNSMEC KDTVSWNSII SGYIQSGDLM EAMKLFKMMM
401: IMEEQADHIT YLMLISVSTR LADLKFGKGL HSNGIKSGIC IDLSVSNALI DMYAKCGEVG DSLKIFSSMG TGDTVTWNTV ISACVRFGDF ATGLQVTTQM
501: RKSEVVPDMA TFLVTLPMCA SLAAKRLGKE IHCCLLRFGY ESELQIGNAL IEMYSKCGCL ENSSRVFERM SRRDVVTWTG MIYAYGMYGE GEKALETFAD
601: MEKSGIVPDS VVFIAIIYAC SHSGLVDEGL ACFEKMKTHY KIDPMIEHYA CVVDLLSRSQ KISKAEEFIQ AMPIKPDASI WASVLRACRT SGDMETAERV
701: SRRIIELNPD DPGYSILASN AYAALRKWDK VSLIRKSLKD KHITKNPGYS WIEVGKNVHV FSSGDDSAPQ SEAIYKSLEI LYSLMAKEGY IPDPREVSQN
801: LEEEEEKRRL ICGHSERLAI AFGLLNTEPG TPLQVMKNLR VCGDCHEVTK LISKIVGREI LVRDANRFHL FKDGTCSCKD RW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)