AT2G40520.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.959 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Nucleotidyltransferase family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Nucleotidyltransferase family protein; FUNCTIONS IN: nucleotidyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Nucleotidyl transferase domain (InterPro:IPR002934); BEST Arabidopsis thaliana protein match is: PAP/OAS1 substrate-binding domain superfamily (TAIR:AT3G56320.1); Has 333 Blast hits to 325 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 59; Fungi - 71; Plants - 155; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:16923541..16925675 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55906.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.32 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||||||||||
| Length | 502 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MADHKGKVPV SLSASSSSLS LSPKTTPIEA EVWLIAEARA QEILCAIQPN YLAERSRNKI ISNLQTLLWE RLGIEVYLFG SMPLKTYLPD GDIDLTVLTH 101: HASEEDCARA VCCVLEAEMG NSDLQVTGVQ YVQAKVKVIK CSIRDVAFDI SFNQLAGLGA LCFLEQVDKA FGRDHLFKKS IILVKAWCFY ESRILGANSG 201: LISTYALAIL VLNIVNMSYS SLSGPLAVLY KFINYYGSFD WKNYCVTVTG PVPISSLPDI TETGNHEVFL DEKFFRECME LYSGETGVVE ASRKYFPVKY 301: YNILDPLKHS NNLGRSVTKG NMVRLRNCFM LGVQKLRDVL TLPGENVGWK LEKFFNVSLE RNGKGQRQDV EEPVVAFGTG AADYSQLKGD FDRYRNNLIY 401: GKWFHGESLH NWLPPSLDTT SWANISFYMS RVRNGFNGRN QEGPTSMPNI KQSPNNRRSN GTGTYIPGMS KQSNTAGCSS SKPSTVKSLP SASETQESKK 501: NP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)