suba logo
AT2G40290.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:22550958 (2012): plastid
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
  • PMID:14617066 (2003): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Eukaryotic translation initiation factor 2 subunit 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Eukaryotic translation initiation factor 2 subunit 1; FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translation; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029), Eukaryotic translation initiation factor 2, alpha subunit (InterPro:IPR011488); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 2 alpha subunit (TAIR:AT5G05470.1); Has 4919 Blast hits to 4230 proteins in 1696 species: Archae - 235; Bacteria - 3462; Metazoa - 170; Fungi - 142; Plants - 94; Viruses - 32; Other Eukaryotes - 784 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1093eggNOG:KOG2916EMBL:AC007020EMBL:AY080668
EMBL:AY117188EMBL:CP002685EnsemblPlants:AT2G40290EnsemblPlants:AT2G40290.1
entrez:818621ExpressionAtlas:Q9SIZ2Gene3D:1.10.150.190Gene3D:2.40.50.140
Gene3D:3.30.70.1130GeneID:818621GO:GO:0003743GO:GO:0005634
GO:GO:0005829GO:GO:0005850Gramene:AT2G40290.1hmmpanther:PTHR10602
hmmpanther:PTHR10602:SF0InterPro:IPR003029InterPro:IPR011488InterPro:IPR012340
InterPro:IPR022967InterPro:IPR024054InterPro:IPR024055OMA:GHPYDAF
Pfam:PF00575Pfam:PF07541Pfscan:PS50126PhylomeDB:Q9SIZ2
PIR:F84827PROSITE:PS50126Proteomes:UP000006548Reactome:R-ATH-156827
Reactome:R-ATH-382556Reactome:R-ATH-72695Reactome:R-ATH-72702Reactome:R-ATH-72731
RefSeq:NP_565927.1SMART:SM00316SMR:Q9SIZ2STRING:3702.AT2G40290.1
SUPFAM:SSF110993SUPFAM:SSF116742SUPFAM:SSF50249TAIR:AT2G40290
UniGene:At.25426UniProt:Q9SIZ2
Coordinates (TAIR10) chr2:-:16829030..16830889
Molecular Weight (calculated) 38749.80 Da
IEP (calculated) 4.81
GRAVY (calculated) -0.36
Length 344 amino acids
Sequence (TAIR10)
(BLAST)
001: MASQTPNLEC RMYEAKYPEV DMAVMIQVKN IADMGAYVSL LEYNNIEGMI LFSELSRRRI RSVSSLIKVG RIEPVMVLRV DKEKGYIDLS KRRVSEEDIQ
101: TCEERYNKSK LVHSIMRHVA ETLSIDLEDL YVNIGWPLYR RHGHAFEAFK ILVTDPDSVL GPLTREIKEV GPDGQEVTKV VPAVTEEVKD ALVKNIRRRM
201: TPQPMKIRAD IELKCFQFDG VVHIKEAMKN AEAAGNEDCP VKIKLVAPPL YVLTTQTLDK EQGIEILNKA IAACTETIET HKGKLVVKEG ARAVSERDEK
301: MLTEHMAKLR LDNEEMSGDE DSGDEEEDTG MGEVDLDAGA GIIE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)