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AT2G39960.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
ASURE: endoplasmic reticulum
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Microsomal signal peptidase 25 kDa subunit (SPC25)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Microsomal signal peptidase 25 kDa subunit (SPC25); FUNCTIONS IN: peptidase activity; INVOLVED IN: signal peptide processing; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: male gametophyte, callus; CONTAINS InterPro DOMAIN/s: Signal peptidase complex subunit 2 (InterPro:IPR009582); BEST Arabidopsis thaliana protein match is: Microsomal signal peptidase 25 kDa subunit (SPC25) (TAIR:AT4G04200.1); Has 283 Blast hits to 281 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 171; Fungi - 36; Plants - 62; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Protein Annotations
BioGrid:3921EC:3.4.-.-eggNOG:ENOG410IV9NeggNOG:ENOG4111HIK
EMBL:AF002109EMBL:AY065212EMBL:AY096518EMBL:CP002685
EnsemblPlants:AT2G39960EnsemblPlants:AT2G39960.1entrez:818583GeneID:818583
Genevisible:P58684GO:GO:0005783GO:GO:0005787GO:GO:0006465
GO:GO:0008233GO:GO:0016021Gramene:AT2G39960.1hmmpanther:PTHR13085
HOGENOM:HOG000239172InParanoid:P58684IntAct:P58684InterPro:IPR009582
KEGG:00261+3.4.-.-KEGG:00310+3.4.-.-KEGG:00550+3.4.-.-KEGG:00780+3.4.-.-
KEGG:ath:AT2G39960KO:K12947MINT:MINT-8064581OMA:NDYAAEP
PaxDb:P58684Pfam:P58684Pfam:PF06703PhylomeDB:P58684
PRIDE:P58684PRO:PR:P58684Proteomes:UP000006548RefSeq:NP_181525.2
STRING:3702.AT2G39960.1TAIR:AT2G39960TMHMM:TMhelixUniGene:At.14665
UniProt:P58684
Coordinates (TAIR10) chr2:-:16681666..16683491
Molecular Weight (calculated) 21643.20 Da
IEP (calculated) 9.44
GRAVY (calculated) -0.15
Length 192 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEKKTESTN KNVKKANLLD HHSIKHILDE SVSDIVTSRG YKEDVRLSNL KLILGTIIIV VALVAQFYNK KFPENRDFLI GCIALYVVLN AVLQLILYTK
101: EKNAILFTYP PEGSFTSTGL VVSSKLPRFS DQYTLTIDSA DPKSISAGKS VQLTKSVTQW FTKDGVLVEG LFWKDVEALI KNYAEEEPKK KK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)