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AT2G39350.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31541795 (2020): plasma membrane
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:22318864 (2012): plasma membrane
  • PMID:20843791 (2010): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ABC-2 type transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ABC-2 type transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: response to nematode; LOCATED IN: plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC-2 type transporter family protein (TAIR:AT3G55090.1); Has 383683 Blast hits to 350637 proteins in 4113 species: Archae - 6942; Bacteria - 305769; Metazoa - 8575; Fungi - 6049; Plants - 5390; Viruses - 9; Other Eukaryotes - 50949 (source: NCBI BLink).
Protein Annotations
BioGrid:3858eggNOG:COG1131eggNOG:KOG0061EMBL:AC004697
EMBL:AK117338EMBL:CP002685EnsemblPlants:AT2G39350EnsemblPlants:AT2G39350.1
entrez:818520Gene3D:3.40.50.300GeneID:818520Genevisible:O80946
GO:GO:0005524GO:GO:0005886GO:GO:0009624GO:GO:0010208
GO:GO:0016021GO:GO:0042626GO:GO:0055085Gramene:AT2G39350.1
hmmpanther:PTHR19241hmmpanther:PTHR19241:SF180HOGENOM:HOG000238446InParanoid:O80946
InterPro:IPR003439InterPro:IPR003593InterPro:IPR013525InterPro:IPR017871
InterPro:IPR027417KEGG:ath:AT2G39350OMA:ETPVHESPaxDb:O80946
Pfam:O80946Pfam:PF00005Pfam:PF01061Pfscan:PS50893
PhylomeDB:O80946PIR:T02567PRIDE:O80946PRO:PR:O80946
PROSITE:PS00211PROSITE:PS50893ProteinModelPortal:O80946Proteomes:UP000006548
RefSeq:NP_181467.1scanprosite:PS00211SMART:SM00382SMR:O80946
STRING:3702.AT2G39350.1SUPFAM:SSF52540TAIR:AT2G39350TMHMM:TMhelix
UniGene:At.48570UniGene:At.70170UniProt:O80946
Coordinates (TAIR10) chr2:-:16430174..16432396
Molecular Weight (calculated) 82336.20 Da
IEP (calculated) 9.93
GRAVY (calculated) 0.09
Length 740 amino acids
Sequence (TAIR10)
(BLAST)
001: MARIVAANDD DSMELNTISS IHDSTLGQLL KNVSDVRKMA IGDETPVHES LNQDYNDGYM RTVPFVLSFD NLTYNVSVRP KLDFRNLFPR RRTEDPEIAQ
101: TARPKTKTLL NNISGETRDG EIMAVLGASG SGKSTLIDAL ANRIAKGSLK GTVKLNGETL QSRMLKVISA YVMQDDLLFP MLTVEETLMF AAEFRLPRSL
201: PKSKKKLRVQ ALIDQLGIRN AAKTIIGDEG HRGISGGERR RVSIGIDIIH DPILLFLDEP TSGLDSTSAF MVVKVLKRIA QSGSIVIMSI HQPSHRVLGL
301: LDRLIFLSRG HTVYSGSPAS LPRFFTEFGS PIPENENRTE FALDLIRELE GSAGGTRGLI EFNKKWQEMK KQSNRQPPLT PPSSPYPNLT LKEAIAASIS
401: RGKLVSGGES VAHGGATTNT TTLAVPAFAN PMWIEIKTLS KRSMLNSRRQ PELFGIRIAS VVITGFILAT VFWRLDNSPK GVQERLGFFA FAMSTMFYTC
501: ADALPVFLQE RYIFMRETAY NAYRRSSYVL SHAIVSFPSL IFLSVAFAAT TYWAVGLDGG LTGLLFYCLI ILASFWSGSS FVTFLSGVVP SVMLGYTIVV
601: AILAYFLLFS GFFINRNRIP DYWIWFHYMS LVKYPYEAVL QNEFSDATKC FVRGVQIFDN TPLGELPEVM KLKLLGTVSK SLGVTISSTT CLTTGSDILR
701: QQGVVQLSKW NCLFITVAFG FFFRILFYFT LLLGSKNKRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)