AT2G37290.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.997 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ypt/Rab-GAP domain of gyp1p superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT3G55020.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:15656935..15661335 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 100709.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.41 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.76 | ||||||||||||||||||||||||||||
| Length | 882 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLLSLVSKRS LEVDSRDAYG FALRPQHVQR YQEYLSIYTE EETERAEKWK NFLDRQEDRT AEPCSSDEEF QDTFQADGLE SGEDSDSESE EGSRNGKHED 101: CELSGTSEQQ LEQDRTETVG DVSKETEPAE EALVLDKSLR SDTESVKDEE EEKFESDKDK ESSVGSESES DEEQQSQAVK EPVDHVHIQQ EEKLVAEEDK 201: CESGHEEKAQ KETKAPRSVI EWAHIRPCLA SIEDMMCSRV KNVKSTKNGQ KNIVDDHASS IKESLSSIEE SGENDRDSET STSRSHSIKE ENEAQGSVSP 301: EPFFPWYEEL EVLVRLGVPK DLRGEVWQAF VGVKARRVER YYQDLLAQIT NSDENSSDVQ RKWKKQIEKD IPRTFPGHPA LNENGRDSLR RILLAYACHN 401: PSVGYCQAMN FFAGLLLLLM PEENAFWTLV GIIDDYFDGY YTEEMIESQV DQLVFEELMR ERFPKLVNHL DYLGVQVAWI SGPWFLSIFV NIIPWECVLR 501: MWDVLLFEGN RVVLFRTAFA IMELYGPAIV ATKDAGDAIT SLQSLASSTF DSSQLVLTAC MGYISTNEAR LEELRKIHRP AVLEIVEERI QKGRVWKDKK 601: GLASKLYSFK HEGSILDHEQ KSTQRNDGEN QDDDDESCSP FLNLDGANVD SEVDSLPDLQ EQVVWMKVEL CRLLEEKRSA VMRAEELEIA LMEMVKEDNR 701: LELSARIEQL ERDVRELKQV LSDKKEQETA MLQVLMKVEQ DQKLTEDARI NAEQDAAAQR YAVHVLQEKN EKLVTQLAQM EKKLVTAETT LEATLQYESG 801: QNKALSSSPR FTRTTTESPK KKTGFLSFGL GWRDRNKAKQ TEESNVDNTS NAASEAKSPS KESVNLSKEN KSEDLLDPET RR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)