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AT2G30770.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21515817 (2011): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : cytochrome P450, family 71, subfamily A, polypeptide 13
Curator
Summary (TAIR10)
putative cytochrome P450
Computational
Description (TAIR10)
cytochrome P450, family 71, subfamily A, polypeptide 13 (CYP71A13); CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 71, subfamily A, polypeptide 12 (TAIR:AT2G30750.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G30770-MONOMERBioCyc:MetaCyc:AT2G30770-MONOMERBioGrid:2977EC:4.99.1.6
eggNOG:COG2124eggNOG:KOG0156EMBL:AC002340EMBL:BX820453
EMBL:CP002685EnsemblPlants:AT2G30770EnsemblPlants:AT2G30770.1entrez:817628
Gene3D:1.10.630.10GeneID:817628Genevisible:O49342GO:GO:0005506
GO:GO:0006952GO:GO:0016021GO:GO:0016705GO:GO:0020037
GO:GO:0047720Gramene:AT2G30770.1gramene_pathway:4.99.1.6gramene_pathway:CAMALEXIN-SYN
gramene_pathway:PWY-581gramene_plant_reactome:1119486gramene_plant_reactome:6873515hmmpanther:PTHR24298
hmmpanther:PTHR24298:SF182HOGENOM:HOG000218629InParanoid:O49342IntAct:O49342
InterPro:IPR001128InterPro:IPR002401InterPro:IPR017972KEGG:ath:AT2G30770
KO:K11868PaxDb:O49342Pfam:O49342Pfam:PF00067
PhylomeDB:O49342PIR:E84712PRINTS:PR00385PRINTS:PR00463
PRO:PR:O49342PROSITE:PS00086ProteinModelPortal:O49342Proteomes:UP000006548
RefSeq:NP_180635.2scanprosite:PS00086SMR:O49342STRING:3702.AT2G30770.1
SUPFAM:SSF48264TAIR:AT2G30770tair10-symbols:CYP71A13TMHMM:TMhelix
UniGene:At.20309UniGene:At.68697UniProt:O49342
Coordinates (TAIR10) chr2:-:13109909..13112006
Molecular Weight (calculated) 56792.20 Da
IEP (calculated) 8.81
GRAVY (calculated) -0.18
Length 503 amino acids
Sequence (TAIR10)
(BLAST)
001: MSNIQEMEMI LSISLCLTTL ITLLLLRRFL KRTATKVNLP PSPWRLPVIG NLHQLSLHPH RSLRSLSLRY GPLMLLHFGR VPILVVSSGE AAQEVLKTHD
101: HKFANRPRSK AVHGLMNGGR DVVFAPYGEY WRQMKSVCIL NLLTNKMVES FEKVREDEVN AMIEKLEKAS SSSSSENLSE LFITLPSDVT SRVALGRKHS
201: EDETARDLKK RVRQIMELLG EFPIGEYVPI LAWIDGIRGF NNKIKEVSRG FSDLMDKVVQ EHLEASNDKA DFVDILLSIE KDKNSGFQVQ RNDIKFMILD
301: MFIGGTSTTS TLLEWTMTEL IRSPKSMKKL QDEIRSTIRP HGSYIKEKEV ENMKYLKAVI KEVLRLHPSL PMILPRLLSE DVKVKGYNIA AGTEVIINAW
401: AIQRDTAIWG PDAEEFKPER HLDSGLDYHG KNLNYIPFGS GRRICPGINL ALGLAEVTVA NLVGRFDWRV EAGPNGDQPD LTEAIGIDVC RKFPLIAFPS
501: SVV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)