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AT2G07734.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Alpha-L RNA-binding motif/Ribosomal protein S4 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Alpha-L RNA-binding motif/Ribosomal protein S4 family protein; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation; LOCATED IN: small ribosomal subunit; CONTAINS InterPro DOMAIN/s: RNA-binding S4 (InterPro:IPR002942); BEST Arabidopsis thaliana protein match is: mitochondrial ribosomal protein S4 (TAIR:ATMG00290.1); Has 1839 Blast hits to 1839 proteins in 823 species: Archae - 0; Bacteria - 683; Metazoa - 0; Fungi - 0; Plants - 800; Viruses - 0; Other Eukaryotes - 356 (source: NCBI BLink).
Protein Annotations
BioGrid:14BioGrid:795eggNOG:ENOG410IID7eggNOG:ENOG410YEHI
EMBL:AC006225EMBL:CP002685EMBL:EF488944EMBL:EF488945
EMBL:JF729200EMBL:JF729201EMBL:JF729202EMBL:X96535
EMBL:Y08501EnsemblPlants:AT2G07734EnsemblPlants:AT2G07734.1EnsemblPlants:ATMG00290.1
entrez:814581entrez:815406ExpressionAtlas:Q31708Gene3D:3.10.290.10
GeneID:814581GeneID:815406Genevisible:Q31708GO:GO:0005739
GO:GO:0005840GO:GO:0019843Gramene:AT2G07734.1Gramene:ATMG00290.1
hmmpanther:PTHR11831hmmpanther:PTHR11831:SF12HOGENOM:HOG000006276InParanoid:Q31708
IntAct:Q31708InterPro:IPR002942InterPro:IPR022801KEGG:ath:ArthMp027
KEGG:ath:AT2G07734KO:K02986PANTHER:PTHR11831PaxDb:Q31708
Pfam:PF01479Pfam:Q31708Pfscan:PS50889PIR:S71904
PRIDE:Q31708PRO:PR:Q31708PROSITE:PS50889ProteinModelPortal:Q31708
Proteomes:UP000006548RefSeq:NP_085497.1RefSeq:NP_178806.1SMART:SM00363
SMR:Q31708STRING:3702.ATMG00290.1SUPFAM:SSF55174TAIR:ATMG00290
UniGene:At.47792UniProt:B5TM97UniProt:Q31708
Coordinates (TAIR10) chr2:-:3472604..3473692
Molecular Weight (calculated) 43028.20 Da
IEP (calculated) 11.74
GRAVY (calculated) -0.65
Length 362 amino acids
Sequence (TAIR10)
(BLAST)
001: MWLLKKLIQR DIDLSPLRFQ TCRLLSGNVR NRELTIIQRR ILRRLRNRKR SIKKRKIYPK KYLTSYIQLQ TTRKLPLFHG DLPITEMHRG TKRTSYIPFP
101: LNPETRFDVI PLRLHFLETI PQARQPISHR RVCVNKGMVS ITHFKLSHGD IISFQENNAI IRGEEIRRSF YKEISVEKII GKLLHQPLRM WRRSKTEWFH
201: LLKTKRGCRL LLKSRFLQQL RSSMQEEDLE RTKKFGSEKV CLGSSFAEHK RMKRNLLKSL FLSKRRKDKN LNLPTRTISP IVYNSSLSLY SNSTYCFASP
301: HKLTMKRRIK RIELPTHYSE VNHRTPKAVV SYGPNIGHIP HDIRLKDPNL PLRSRNGRGQ NI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)