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AT2G28305.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.500
nucleus 0.500
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Putative lysine decarboxylase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
LONELY GUY 1 (LOG1); CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00730 (InterPro:IPR005269); BEST Arabidopsis thaliana protein match is: lysine decarboxylase family protein (TAIR:AT2G37210.1); Has 5303 Blast hits to 5301 proteins in 1556 species: Archae - 26; Bacteria - 3660; Metazoa - 10; Fungi - 132; Plants - 396; Viruses - 0; Other Eukaryotes - 1079 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1194-MONOMERBioGrid:2726EC:3.2.2.n1eggNOG:COG1611
eggNOG:ENOG410IHVEEMBL:AC006202EMBL:AC006283EMBL:AF361629
EMBL:AY081836EMBL:AY086265EMBL:CP002685EnsemblPlants:AT2G28305
EnsemblPlants:AT2G28305.1entrez:817376GeneID:817376Genevisible:Q8RUN2
GO:GO:0005634GO:GO:0005829GO:GO:0009691GO:GO:0016799
Gramene:AT2G28305.1hmmpanther:PTHR31223hmmpanther:PTHR31223:SF23HOGENOM:HOG000156894
InterPro:IPR005269InterPro:IPR031100KEGG:ath:AT2G28305KO:K06966
OMA:PTCEISRPaxDb:Q8RUN2Pfam:PF03641Pfam:Q8RUN2
PhylomeDB:Q8RUN2PRIDE:Q8RUN2PRO:PR:Q8RUN2ProteinModelPortal:Q8RUN2
Proteomes:UP000006548RefSeq:NP_565668.1SMR:Q8RUN2STRING:3702.AT2G28305.1
SUPFAM:SSF102405TAIR:AT2G28305tair10-symbols:ATLOG1tair10-symbols:LOG1
TIGRfam:TIGR00730TIGRFAMs:TIGR00730UniGene:At.19115UniProt:Q8RUN2
Coordinates (TAIR10) chr2:+:12081186..12084307
Molecular Weight (calculated) 23204.20 Da
IEP (calculated) 6.52
GRAVY (calculated) -0.02
Length 213 amino acids
Sequence (TAIR10)
(BLAST)
001: MEIESKFKRI CVFCGSSAGN KVSYKDAAIE LGTELVSRNI DLVYGGGSIG LMGLISQAVF NGGRHVIGVI PKTLMPREIT GETVGEVKAV ADMHQRKAEM
101: AKHSDAFIAL PGGYGTLEEL LEVITWAQLG IHDKPVGLLN VEGYYNSLLS FIDKAVEEGF ISPTARHIIV SAPSAKELVK KLEDYVPRHE KVASKKSWEM
201: EQIGLSPTCE ISR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)