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AT2G23540.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GDSL-like Lipase/Acylhydrolase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, hypocotyl, root, flower; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT3G50400.1); Has 3581 Blast hits to 3540 proteins in 243 species: Archae - 0; Bacteria - 373; Metazoa - 0; Fungi - 51; Plants - 3139; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G23540-MONOMEREC:3.1.1.-eggNOG:ENOG410IHU1eggNOG:ENOG410ZH2N
EMBL:AC003040EMBL:AY099614EMBL:AY128861EMBL:CP002685
EnsemblPlants:AT2G23540EnsemblPlants:AT2G23540.1entrez:816886Gene3D:3.40.50.1110
GeneID:816886Genevisible:O80470GO:GO:0005576GO:GO:0016042
GO:GO:0016788Gramene:AT2G23540.1hmmpanther:PTHR22835hmmpanther:PTHR22835:SF147
HOGENOM:HOG000237649InParanoid:O80470InterPro:IPR001087InterPro:IPR013830
KEGG:ath:AT2G23540ncoils:CoilOMA:RFCLANVPaxDb:O80470
Pfam:O80470Pfam:PF00657PhylomeDB:O80470PIR:T01143
PRIDE:O80470PRO:PR:O80470ProteinModelPortal:O80470Proteomes:UP000006548
RefSeq:NP_179935.1STRING:3702.AT2G23540.1SUPFAM:SSF52266TAIR:AT2G23540
TMHMM:TMhelixUniGene:At.43513UniProt:O80470
Coordinates (TAIR10) chr2:+:10024366..10026058
Molecular Weight (calculated) 42085.50 Da
IEP (calculated) 8.32
GRAVY (calculated) -0.10
Length 387 amino acids
Sequence (TAIR10)
(BLAST)
001: MATRASTSSR VSPAFTFLVI FFLLSLTASV EAAGRGVNND KKGGGLGASF IFGDSLVDAG NNNYLSTLSR ANMKPNGIDF KASGGTPTGR FTNGRTIGDI
101: VGEELGSANY AIPFLAPDAK GKALLAGVNY ASGGGGIMNA TGRIFVNRLG MDVQVDFFNT TRKQFDDLLG KEKAKDYIAK KSIFSITIGA NDFLNNYLFP
201: LLSVGTRFTQ TPDDFIGDML EHLRDQLTRL YQLDARKFVI GNVGPIGCIP YQKTINQLDE NECVDLANKL ANQYNVRLKS LLEELNKKLP GAMFVHANVY
301: DLVMELITNY DKYGFKSATK ACCGNGGQYA GIIPCGPTSS LCEERDKYVF WDPYHPSEAA NVIIAKQLLY GDVKVISPVN LSKLRDM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)