AT1G78780.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : pathogenesis-related family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
pathogenesis-related family protein; Has 199 Blast hits to 198 proteins in 70 species: Archae - 0; Bacteria - 51; Metazoa - 15; Fungi - 40; Plants - 91; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:29621447..29622153 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 19969.50 Da | ||||||||||||||||||||||||
| IEP (calculated) | 4.95 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.49 | ||||||||||||||||||||||||
| Length | 176 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEFSHKIRLQ DFKTINPEKF KLFVNGREGL SAEETLRLGS YNALLKNSLP EEFQYYKPEE ESFESSHDAF RSALPRGFAW EILSVYSGPP VIAFKFRHWG 101: YFEGTFKGHA PTGEMVQFLG LGVLKVDESL RAEEIEIYYD PGELFGGLLK GPPISETKTT DSGDNTAEKQ SCPFTH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)