AT3G03650.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.547 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Exostosin family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
embryo sac development arrest 5 (EDA5); FUNCTIONS IN: catalytic activity; INVOLVED IN: megagametogenesis, pollen tube development; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: exostosin family protein (TAIR:AT3G45400.1); Has 1124 Blast hits to 1120 proteins in 61 species: Archae - 0; Bacteria - 6; Metazoa - 39; Fungi - 0; Plants - 1020; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:884298..886166 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 57148.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.76 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||||||||||||||||||||||||||
| Length | 499 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGEKTNSRYL GVIITRKSII FLFISIITVL SWFFIFSSTN PNRVLDHISV SESTDVPLII IKNSNSSPQN NAPKPQNREG AETEEPIKEN RGGTKTESSM 101: NQNRGETLRC IQRVSPSPRP LKVYMYDMSP EFHFGLLGWK PERNGVVWPD IRVNVPHHPG GLNLQHSVEY WLTLDLLFSE LPEDSRSSRA AIRVKNSSEA 201: DVVFVPFFSS LSYNRFSKVN QKQKKSQDKE LQENVVKYVT SQKEWKTSGG KDHVIMAHHP NSMSTARHKL FPAMFVVADF GRYSPHVANV DKDIVAPYKH 301: LVPSYVNDTS GFDGRPILLY FQGAIYRKAG GFVRQELYNL LKEEKDVHFS FGSVRNHGIS KAGEGMRSSK FCLNIAGDTP SSNRLFDAIA SHCIPVIISD 401: DIELPYEDVL NYNEFCLFVR SSDALKKGFL MGLVRSIGRE EYNKMWLRLK EVERYFDLRF PVKDDEGDYA VQMIWKAVAR KAPLVKMKVH RFQRFTRPF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)