AT1G77170.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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| FP Images |
Arabidopsis cell culture (endoplasmic reticulum marker)
Arabidopsis cell culture (plastidal marker)
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G21065.1); Has 36578 Blast hits to 13720 proteins in 224 species: Archae - 0; Bacteria - 18; Metazoa - 87; Fungi - 88; Plants - 35844; Viruses - 0; Other Eukaryotes - 541 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:28998133..28999536 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52660.10 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.91 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.05 | ||||||||||||||||||||||||||||||||||||||||
| Length | 467 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFFSGLISKL HVHGTKRTNH FTIFHRLNHF VTTSSSSVTP LSPQDRNKLL ATLLSNCTSL ARVRRIHGDI FRSRILDQYP IAFLWNNIMR SYIRHESPLD 101: AIQVYLGMVR STVLPDRYSL PIVIKAAVQI HDFTLGKELH SVAVRLGFVG DEFCESGFIT LYCKAGEFEN ARKVFDENPE RKLGSWNAII GGLNHAGRAN 201: EAVEMFVDMK RSGLEPDDFT MVSVTASCGG LGDLSLAFQL HKCVLQAKTE EKSDIMMLNS LIDMYGKCGR MDLASHIFEE MRQRNVVSWS SMIVGYAANG 301: NTLEALECFR QMREFGVRPN KITFVGVLSA CVHGGLVEEG KTYFAMMKSE FELEPGLSHY GCIVDLLSRD GQLKEAKKVV EEMPMKPNVM VWGCLMGGCE 401: KFGDVEMAEW VAPYMVELEP WNDGVYVVLA NVYALRGMWK DVERVRKLMK TKKVAKIPAY SYASTTF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)